Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma14g01344 | ATGGATCCTCAAGGACCAAGCCAACCTCCGTCAATGGGGGTTGTTGGGGGCGGGCTTCAATTTCCATACGGTTCGAGTTTTTACGAGCCGAATCAGATCACTGGAAACCAAAGTTCAGGGCCGATGATGGGAGCCGTTCAATCCGCAAGCCAGCCCGGGGGACCCCAGCTAGCATTTCAGCAGATGCACCAGCAACTCCAGCAACAGCTCCAGAACTTCTGGGAGAATCAGAGCCGTGAAATCGAGAAGGTGACAGATTTCAAAAACCATAGTCTCCCATTGGCCAGGATCAAGAAGATCATGAAGGCGGATGAAGATGTGCGGATGATCTCGGCCGAGGCCCCCGTCGTGTTTGCCAGGGCATGTGAAATGTTCATCTTGGAATTGACCCTCCGATCATGGAATCACACGGAGGAGAACAAAAGGAGGACGCTCCAGAAAAACGACATCGCAGCCGCAATCACGAGAACTGATATCTTTGACTTTTTGGTTGACATTGTCCCGAGGGACGATCCGAAAGACGAAGTGCTCGCCTCCTTCCCTCGGGGAGCTATGCCGGTTGGGGCCCCAGTCGACGGGATCCCGTACGACATGCCACCTCAGCATCCAGGGATGATGGCAGGGATGTACGCCCCTCCACCTCACCCCTATATGGTCCCGCAAATGTGGCCCCACGTACCGGATCAACATCAATCGAGTTCCGATCAGTAG | 711 | 54.43 | MDPQGPSQPPSMGVVGGGLQFPYGSSFYEPNQITGNQSSGPMMGAVQSASQPGGPQLAFQQMHQQLQQQLQNFWENQSREIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDDPKDEVLASFPRGAMPVGAPVDGIPYDMPPQHPGMMAGMYAPPPHPYMVPQMWPHVPDQHQSSSDQ | 236 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 24851229 | 24851939 | - | Bma011974.1 | Bma14g01344 | 95325 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma14g01344 | 236 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 1 | 236 | - | - | |
Bma14g01344 | 236 | Pfam | Core histone H2A/H2B/H3/H4 | 58 | 154 | IPR007125 | GO:0003677 | |
Bma14g01344 | 236 | Gene3D | Histone, subunit A | 56 | 169 | IPR009072 | GO:0046982 | |
Bma14g01344 | 236 | SUPERFAMILY | Histone-fold | 66 | 163 | IPR009072 | GO:0046982 | |
Bma14g01344 | 236 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 | 1 | 236 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma05g00812 | Bma-Chr5:45432641 | Bma14g01344 | Bma-Chr14:24851229 | 3.56E-32 | dispersed | |
Bma11g00317 | Bma-Chr11:2976158 | Bma14g01344 | Bma-Chr14:24851229 | 1.33E-11 | dispersed | |
Bma14g01344 | Bma-Chr14:24851229 | Bma08g00818 | Bma-Chr8:45893581 | 2.12E-67 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58377 | PF00808 | CBFD_NFYB_HMF | 3.90E-18 | CL0012 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma14g01344 | K08066 | - | csv:101209664 | 313.923 |