Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01344 ATGGATCCTCAAGGACCAAGCCAACCTCCGTCAATGGGGGTTGTTGGGGGCGGGCTTCAATTTCCATACGGTTCGAGTTTTTACGAGCCGAATCAGATCACTGGAAACCAAAGTTCAGGGCCGATGATGGGAGCCGTTCAATCCGCAAGCCAGCCCGGGGGACCCCAGCTAGCATTTCAGCAGATGCACCAGCAACTCCAGCAACAGCTCCAGAACTTCTGGGAGAATCAGAGCCGTGAAATCGAGAAGGTGACAGATTTCAAAAACCATAGTCTCCCATTGGCCAGGATCAAGAAGATCATGAAGGCGGATGAAGATGTGCGGATGATCTCGGCCGAGGCCCCCGTCGTGTTTGCCAGGGCATGTGAAATGTTCATCTTGGAATTGACCCTCCGATCATGGAATCACACGGAGGAGAACAAAAGGAGGACGCTCCAGAAAAACGACATCGCAGCCGCAATCACGAGAACTGATATCTTTGACTTTTTGGTTGACATTGTCCCGAGGGACGATCCGAAAGACGAAGTGCTCGCCTCCTTCCCTCGGGGAGCTATGCCGGTTGGGGCCCCAGTCGACGGGATCCCGTACGACATGCCACCTCAGCATCCAGGGATGATGGCAGGGATGTACGCCCCTCCACCTCACCCCTATATGGTCCCGCAAATGTGGCCCCACGTACCGGATCAACATCAATCGAGTTCCGATCAGTAG 711 54.43 MDPQGPSQPPSMGVVGGGLQFPYGSSFYEPNQITGNQSSGPMMGAVQSASQPGGPQLAFQQMHQQLQQQLQNFWENQSREIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDDPKDEVLASFPRGAMPVGAPVDGIPYDMPPQHPGMMAGMYAPPPHPYMVPQMWPHVPDQHQSSSDQ 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 24851229 24851939 - Bma011974.1 Bma14g01344 95325

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01344 236 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 236 - -
Bma14g01344 236 Pfam Core histone H2A/H2B/H3/H4 58 154 IPR007125 GO:0003677
Bma14g01344 236 Gene3D Histone, subunit A 56 169 IPR009072 GO:0046982
Bma14g01344 236 SUPERFAMILY Histone-fold 66 163 IPR009072 GO:0046982
Bma14g01344 236 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01344 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - csv:101209664 313.923
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00812 Bma-Chr5:45432641 Bma14g01344 Bma-Chr14:24851229 3.56E-32 dispersed
Bma11g00317 Bma-Chr11:2976158 Bma14g01344 Bma-Chr14:24851229 1.33E-11 dispersed
Bma14g01344 Bma-Chr14:24851229 Bma08g00818 Bma-Chr8:45893581 2.12E-67 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g01251 CCT,ECH 53 237 CCAAT-HAP5 Transcription Factor Family AT3G48590 76.4 6.2e-73 270.8
Bma06g00262 . 39 223 CCAAT-HAP5 Transcription Factor Family AT3G48590 71.7 2.1e-65 245.7
Bma08g00818 . 61 196 CCAAT-HAP5 Transcription Factor Family AT3G48590 71.5 1.5e-50 196.4
Bma14g01344 . 73 226 CCAAT-HAP5 Transcription Factor Family AT3G48590 66.0 3.7e-49 191.8
Bma14g01344 . 23 168 CCAAT-HAP5 Transcription Factor Family AT1G08970 74.2 1.1e-50 196.8
Bma08g00818 . 5 159 CCAAT-HAP5 Transcription Factor Family AT1G08970 67.1 1.2e-47 186.8
Bma03g01251 CCT,ECH 53 151 CCAAT-HAP5 Transcription Factor Family AT1G08970 79.8 2.1e-41 166.0
Bma06g00262 . 39 137 CCAAT-HAP5 Transcription Factor Family AT1G08970 78.8 4.7e-41 164.9
Bma14g01344 . 72 223 CCAAT-HAP5 Transcription Factor Family AT1G54830 71.1 5.6e-52 201.1
Bma08g00818 . 61 191 CCAAT-HAP5 Transcription Factor Family AT1G54830 74.0 6.9e-50 194.1
Bma03g01251 CCT,ECH 53 190 CCAAT-HAP5 Transcription Factor Family AT1G54830 69.3 2.2e-48 189.1
Bma06g00262 . 39 176 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.9 8.4e-48 187.2
Bma03g01251 CCT,ECH 53 237 CCAAT-HAP5 Transcription Factor Family AT5G63470 69.6 5.1e-65 244.6
Bma06g00262 . 39 223 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.9 2.7e-58 222.2
Bma08g00818 . 61 190 CCAAT-HAP5 Transcription Factor Family AT5G63470 70.5 2.8e-47 185.7
Bma14g01344 . 73 226 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.3 5.0e-44 174.9
Bma08g00818 . 21 189 CCAAT-HAP5 Transcription Factor Family AT1G56170 79.4 1.7e-63 239.2
Bma03g01251 CCT,ECH 53 176 CCAAT-HAP5 Transcription Factor Family AT1G56170 71.7 1.2e-48 189.9
Bma14g01344 . 45 190 CCAAT-HAP5 Transcription Factor Family AT1G56170 70.3 4.5e-48 188.0
Bma06g00262 . 39 162 CCAAT-HAP5 Transcription Factor Family AT1G56170 72.4 7.7e-48 187.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58377 PF00808 CBFD_NFYB_HMF 3.90E-18 CL0012 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01344 Bma_Chr14 FPKM 2.041384 2.88473 3.44931 4.0241 4.864291 5.457692 5.534252 4.682076 4.379865 4.453877