Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01394 GTTGTCCCTAATTTTTTGAGTCTTCCTCGACCTCGACCTCAATCTACGCTAGATTCAGATATGGGTGAAAATAAGCCGACTGAAATTAAAGATTTTCAGATTACAGTAGCAGATAAAGAAGAGGGGAAGAAGCAATTAGGTCCAAAAAGAAGCTCGAATAAAGACAGGCACACTAAGGTAGATGGTCGAGGAAGAAGGATACGGATGCCAGCTCTATGCGCAGCAAGAATTTTCCAATTGACAAGAGAATTAGGTCATAAATCAGATGGGGAAACCATCCAGTGGCTCTTGCAACAGGCGGAACCGTCGATAATTGCGGCTACCGGAACCGGGACTATCCCGGCTTCCGCTTTAGCCGCCGCCGGAATATCTTTTTCACAGCAAGTGACCTCTTTGTCAACTGGATTGCACCAAAAGACTGAGGATGATTTTGGGGGGTCAGGAAGTATGACCAGTTGGGCTTTGATGGGTGGCAATTTGGGGAGACCACCGTTCCATATGGGTTCAGGGCTATGGCCTCCGATCAGTGGCTTTGGGCCTAGGTCATCGTCTTCTCCGAACAGAAATTTGACGCCAGAGAGTGCAAATTATCTTCAGAAGATCGTTCCCGGGCTTGACTTGCCAGTCGGAAATATGGGTCCGATGACTTTCACCTCTATTCTGAGCGGCAATAGCCAGCATCTGCCGGAACTGGGACTCGGCCTTTCCCCAGAAGGTCACATCGGAGCTTTGAACCCACAGTCTTTGAGCCAGTTTTACCAGCAGATGAGGCAGGCTAGAGTTCAAACGCTCCATCACCAAGCTTCTCCCAAGGATGACTCTCAAGATTCAGACTCAGCCAACTAG 846 48.7 VVPNFLSLPRPRPQSTLDSDMGENKPTEIKDFQITVADKEEGKKQLGPKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGISFSQQVTSLSTGLHQKTEDDFGGSGSMTSWALMGGNLGRPPFHMGSGLWPPISGFGPRSSSSPNRNLTPESANYLQKIVPGLDLPVGNMGPMTFTSILSGNSQHLPELGLGLSPEGHIGALNPQSLSQFYQQMRQARVQTLHHQASPKDDSQDSDSAN 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 26170313 26171158 + Bma012038.1 Bma14g01394 95375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01394 281 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 23 276 IPR005333 GO:0003700
Bma14g01394 281 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 23 276 - -
Bma14g01394 281 MobiDBLite consensus disorder prediction 23 63 - -
Bma14g01394 281 MobiDBLite consensus disorder prediction 1 63 - -
Bma14g01394 281 Pfam TCP family transcription factor 52 138 IPR017887 -
Bma14g01394 281 MobiDBLite consensus disorder prediction 261 281 - -
Bma14g01394 281 ProSiteProfiles TCP domain profile. 53 107 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01394 - - - jre:108987051 393.275
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00655 Bma-Chr2:18238399 Bma14g01394 Bma-Chr14:26170313 1.12E-114 dispersed
Bma13g00592 Bma-Chr13:13640844 Bma14g01394 Bma-Chr14:26170313 2.23E-161 dispersed
Bma14g01394 Bma-Chr14:26170313 Bma14g01851 Bma-Chr14:39881354 7.58E-35 dispersed
Bma14g01394 Bma-Chr14:26170313 Bma14g01410 Bma-Chr14:26659192 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00844 . 35 261 TCP Transcription Factor Family AT5G23280 58.1 2.7e-58 222.2
Bma03g00454 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.7e-52 203.0
Bma14g01851 . 103 186 TCP Transcription Factor Family AT3G47620 88.1 2.0e-36 150.6
Bma13g00592 . 6 259 TCP Transcription Factor Family AT3G27010 58.1 7.6e-66 247.7
Bma14g01394 . 19 277 TCP Transcription Factor Family AT3G27010 54.8 1.8e-59 226.5
Bma14g01410 . 7 257 TCP Transcription Factor Family AT3G27010 55.3 5.8e-58 221.5
Bma08g00844 . 8 259 TCP Transcription Factor Family AT5G08330 53.8 4.7e-60 228.0
Bma03g00454 . 1 259 TCP Transcription Factor Family AT5G08330 51.2 8.0e-60 227.3
Bma08g00244 BCT,CCT 30 123 TCP Transcription Factor Family AT5G60970 78.9 5.8e-38 155.2
Bma01g01086 . 31 132 TCP Transcription Factor Family AT3G02150 78.8 1.4e-39 160.6
Bma03g01315 BCT,CCT,ECH 8 192 TCP Transcription Factor Family AT2G31070 54.0 7.9e-43 171.4
Bma08g00546 CCT,ECH 112 296 TCP Transcription Factor Family AT2G31070 50.5 1.5e-38 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58381 PF03634 TCP 2.90E-31 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01394 Bma_Chr14 FPKM 129.286575 139.198914 140.569809 142.245773 48.316982 43.526627 47.150906 195.853928 197.567474 199.331543