Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01426 ATGGCTGTGACGAATAGTGCAACTAAGTCGCCGGAGGCCGAGCCAGATCGAACGGCGACCGAGGTTTTACCGATTAAGGCTTTACCCTTTAGTAATGGTGTTTTGAAGAGGCAGAATCCTCAGAGTCATCATCATCGTCACCACCTCAGCTCTGCCGTTAACTCCGCCGTCGTTTCCTACAAAGAATGTCTGAAAAACCATGCGGCTAGCTTAGGAACTCACGCTTTAGATGGGTGTGGAGAATTCATGCCTTCTCCTTCTGCAACTTCTTCCGATCCCACTTCTTTCAAATGCGCCGCCTGCGGATGTCACCGGAACTTTCACCGCCGGGAGCCCGACGACAGTTATCCAGCATTTGCCACGCATGTAATCGAGTACCAGCCACACCACCGCCACCACCCGCCGCAGCCAATTACTCGGAGTCCAAATTCTGCATCGCCTCCACCGATCTCCTCCTCCTACTACCATTCAGCTCCGCACATGCTTCTGGCTCTATCGGCAGGGCTGTCTACTCATCCGGAAAGTGCACCGGCGGCTAACCGGTGTTCAAACGGGAGGAAGCGATTCAGAACCAGATTCACTCCGGACCAAAAAGAGAAAATGCATCAGTTTGCAGAAAGTATGGGATGGAGGATGCAGAAGAGAGATGAAGAAATGGTTCAAGAGTTTTGCAATGAGATTGGTATAGATAAAGGAGTTTTGAAAGTATGGATGCACAATAACAAAAACTCATCTTCGAAGAAGGATGTTAATGGCGGAACGAATATTCCGGAACTCCACAACAGCAACATCGGCGGGCATATAAATCTCTACGATGATGATGAACGGGTACATGCCGCCATTAATGTCTTTTCTTCTTCTTCCTGA 867 49.37 MAVTNSATKSPEAEPDRTATEVLPIKALPFSNGVLKRQNPQSHHHRHHLSSAVNSAVVSYKECLKNHAASLGTHALDGCGEFMPSPSATSSDPTSFKCAACGCHRNFHRREPDDSYPAFATHVIEYQPHHRHHPPQPITRSPNSASPPPISSSYYHSAPHMLLALSAGLSTHPESAPAANRCSNGRKRFRTRFTPDQKEKMHQFAESMGWRMQKRDEEMVQEFCNEIGIDKGVLKVWMHNNKNSSSKKDVNGGTNIPELHNSNIGGHINLYDDDERVHAAINVFSSSS 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 27153876 27154742 + Bma012082.1 Bma14g01426 95407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01426 288 MobiDBLite consensus disorder prediction 129 149 - -
Bma14g01426 288 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 4 264 - -
Bma14g01426 288 CDD homeodomain 187 240 IPR001356 GO:0003677
Bma14g01426 288 Pfam ZF-HD protein dimerisation region 58 112 IPR006456 -
Bma14g01426 288 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 60 111 IPR006456 -
Bma14g01426 288 MobiDBLite consensus disorder prediction 1 21 - -
Bma14g01426 288 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 264 - -
Bma14g01426 288 Gene3D - 172 248 - -
Bma14g01426 288 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 186 243 IPR006455 -
Bma14g01426 288 SUPERFAMILY Homeodomain-like 175 247 IPR009057 -
Bma14g01426 288 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 60 111 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01426 - - - jre:108984667 325.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00421 Bma-Chr2:6385066 Bma14g01426 Bma-Chr14:27153876 1.33E-101 dispersed
Bma12g00035 Bma-Chr12:912067 Bma14g01426 Bma-Chr14:27153876 2.74E-43 dispersed
Bma13g00147 Bma-Chr13:1565387 Bma14g01426 Bma-Chr14:27153876 5.17E-59 dispersed
Bma14g01426 Bma-Chr14:27153876 Bma05g00124 Bma-Chr5:3902942 3.95E-43 dispersed
Bma14g01426 Bma-Chr14:27153876 Bma06g00120 Bma-Chr6:1632572 3.73E-47 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma09g00128 . 43 233 ZF-HD Transcription Factor Family AT5G65410 54.5 1.2e-49 193.7
Bma01g02594 . 53 246 ZF-HD Transcription Factor Family AT5G65410 52.1 1.3e-45 180.3
Bma01g02594 . 1 242 ZF-HD Transcription Factor Family AT4G24660 52.1 3.1e-56 215.3
Bma09g00128 . 1 229 ZF-HD Transcription Factor Family AT4G24660 51.3 2.9e-54 208.8
Bma05g00124 BCT 91 287 ZF-HD Transcription Factor Family AT4G24660 50.3 1.1e-42 170.2
Bma02g00421 CCT 10 242 ZF-HD Transcription Factor Family AT5G15210 56.5 5.0e-50 194.9
Bma02g00421 CCT 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 4.9e-57 218.4
Bma02g00421 CCT 24 252 ZF-HD Transcription Factor Family AT5G39760 56.0 3.3e-51 199.1
Bma14g01426 . 58 244 ZF-HD Transcription Factor Family AT1G69600 53.6 1.0e-49 193.7
Bma01g02594 . 1 242 ZF-HD Transcription Factor Family AT4G24660 52.1 3.1e-56 215.3
Bma09g00128 . 1 229 ZF-HD Transcription Factor Family AT4G24660 51.3 2.9e-54 208.8
Bma05g00124 BCT 91 287 ZF-HD Transcription Factor Family AT4G24660 50.3 1.1e-42 170.2
Bma02g00421 CCT 24 252 ZF-HD Transcription Factor Family AT5G39760 56.0 3.3e-51 199.1
Bma09g00128 . 43 233 ZF-HD Transcription Factor Family AT5G65410 54.5 1.2e-49 193.7
Bma01g02594 . 53 246 ZF-HD Transcription Factor Family AT5G65410 52.1 1.3e-45 180.3
Bma14g01426 . 58 244 ZF-HD Transcription Factor Family AT1G69600 53.6 1.0e-49 193.7
Bma02g00421 CCT 10 242 ZF-HD Transcription Factor Family AT5G15210 56.5 5.0e-50 194.9
Bma02g00421 CCT 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 4.9e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58387 PF04770 ZF-HD_dimer 2.60E-28 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01426 Bma_Chr14 FPKM 2.603704 2.193121 1.62265 2.305617 8.890257 9.65622 8.256047 5.295649 5.165532 6.114124