Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01508 ATGGCTTCTTCTTCAAACTATTCGAATTCTCCGTGTGCTGCCTGCAAGTTCTTGAGGAGAAAATGCTTGCCAAATTGCATTTTCGCCCCATATTTCCCTCCTGAAGAGCCACAGAAATTTGTGAATGTTCACAAGATATTTGGAGCAAGTAATGTGAGTAAGCTTCTGAATGAAGTCCTACCTCATCAGAGAGAAGATGCAGTAAATTCTCTTGCGTATGAAGCAGAAGCAAGAATCAAAGATCCAGTCTATGGCTGCGTTGGAGCCATTTCAATCCTGCAAAAGCAAGTTCTTCGCCTGAAGAAAGAGTTAGACGCCACAAATGCAGATCTGATAAGGTATGCCTATAATGAATTACCCACTTCTCAGTTCGGAAGGAGATTTGGCCATGATTCAAGTCTGTTTTTCTCTCCTCCTGCAAACAATGGCGGATATGGAGATACCCATCAGTAA 453 42.38 MASSSNYSNSPCAACKFLRRKCLPNCIFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISILQKQVLRLKKELDATNADLIRYAYNELPTSQFGRRFGHDSSLFFSPPANNGGYGDTHQ 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 30351599 30352051 - Bma012177.1 Bma14g01508 95489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01508 150 Coils Coil 90 110 - -
Bma14g01508 150 Pfam Lateral organ boundaries (LOB) domain 11 107 IPR004883 -
Bma14g01508 150 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Bma14g01508 150 PANTHER PROTEIN LATERAL ORGAN BOUNDARIES 4 123 - -
Bma14g01508 150 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 123 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01484 Bma-Chr14:30097229 Bma14g01508 Bma-Chr14:30351599 9.59E-112 dispersed
Bma14g01508 Bma-Chr14:30351599 Bma08g01029 Bma-Chr8:49439546 8.70E-47 dispersed
Bma14g01508 Bma-Chr14:30351599 Bma12g01049 Bma-Chr12:42560363 2.88E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58395 PF03195 LOB 2.30E-41 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01508 - - jre:109021641 242.662