Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01579 CTAATTAGGGTTAGGGCGTTAACCCCCATGGAGGCGGCTGATAGCGATCCCGACTCTTATCGGACTTCTTCCGCCGGTGATAATTCTCGAAGATATGGGATGCTATCTGCTTCTAGTATAATTCAAGCGCCACTCTCGGCACTGCTGGAGTATTCTGGTCTTCTTCGGGGACGATCGAGTTTCCAAGAATCGGAGCCTTTGGTGAATGGTCGTATACACCCAAGGTTTCGGGATCGGCTACGTAGTCAGCTTGAGGAATCTACGGGGGTCAACAACGATGGGGAGGTTTCGATTAGGATAATTGGCGCTGGGGAAGAAGAGCTTGAACGGGAAGCCACAGGGTTAGTAGTTGGGCAATCACGGGAAGTGAATTCCCAGAGCGAGGTATCTATGCTTCAATCAATGCCAGGGTTGACCTCGACAACATTGGTGTCCGAAGGTGCTCAGGAAGATTCTAGAATCGATCGAGGTGCAGAGGAAGGGATTTCCCACTCAACGAACGGGGGTTCTGTTGGACAAACCGTAGATGGAGCTGGGGCAAATGCCAGAGATTCTTCTTACCAGAGGTACGATATTCAACAGGCAGCTAGGTGGGTCGAGCAGGTTCTCCCATTCAGTTTACTTTTGTTGGTAGTCTTCATCCGACAACATCTACAAGGTTTCTTTGTCACAATTTGGATTACTGCTGTTATGTTTAAGTCAAATGATATCCTACGGAAACAGACAGCTCTTAAGGGAGAGAGGAAACTTTCTGTTTTGATTAGTATTTCTCTTGCATTCACAATGCATGTCGTGGGTGTTTACTGGTGGTATCAGAATGATGATCTCCTGTATCCATTGGTCATGCTTCCTCCCAGAACAATACCCCCATTTTGGCACGCAATTTTCATCATTTTGGTTAATGATACCTTGGTTCGGCAGGCTGTGATGGCATTCAAGTGTGTTCTGTTAATGCATTATAAGAACAGTAGGGGCCGTGAGTATCGTAAACAGGGTCAAATGCTAACATTGGTTGAATACCTACTTCTGCTGTACCGTGCCTTATTGCCAACTCCAGTATGGTATCGTTTCTTCCTGAATAAAGATTATGGGAGTTTGTTTTCATCACTGATGACTGGATTGTATTTAACATTTAAGCTAACGTCCATTGTTGAAAAGCTGCAATCGTTCTTTGCGGCAGTGAAGGCATTTTCACAGAAAGAGGTACATTATGGGGCTTATGCTACATCAGAACAGGTGAATGCAGCGGGTGATCTATGTGCTATTTGCCAGGAGAAGATGCATACCCCTGTTCTACTTCGTTGCAAGCACATCTTCTGCGAGGACTGTGTATCAGAATGGTTTGAGAGGGAACGAACATGCCCATTGTGCAGGGCGCTAGTGAAACCTGCAGATCTGAGGTCATTTGGTGACGGATCGACGAGTTTGTTTTTCCAGTTGTTCTAA 1446 45.99 LIRVRALTPMEAADSDPDSYRTSSAGDNSRRYGMLSASSIIQAPLSALLEYSGLLRGRSSFQESEPLVNGRIHPRFRDRLRSQLEESTGVNNDGEVSIRIIGAGEEELEREATGLVVGQSREVNSQSEVSMLQSMPGLTSTTLVSEGAQEDSRIDRGAEEGISHSTNGGSVGQTVDGAGANARDSSYQRYDIQQAARWVEQVLPFSLLLLVVFIRQHLQGFFVTIWITAVMFKSNDILRKQTALKGERKLSVLISISLAFTMHVVGVYWWYQNDDLLYPLVMLPPRTIPPFWHAIFIILVNDTLVRQAVMAFKCVLLMHYKNSRGREYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKDYGSLFSSLMTGLYLTFKLTSIVEKLQSFFAAVKAFSQKEVHYGAYATSEQVNAAGDLCAICQEKMHTPVLLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 32642769 32648889 + Bma012271.1 Bma14g01579 95560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01579 481 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 481 - -
Bma14g01579 481 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 10 481 IPR044235 GO:0061630|GO:1904294
Bma14g01579 481 MobiDBLite consensus disorder prediction 159 178 - -
Bma14g01579 481 ProSitePatterns Zinc finger RING-type signature. 435 444 IPR017907 -
Bma14g01579 481 ProSiteProfiles Zinc finger RING-type profile. 420 458 IPR001841 -
Bma14g01579 481 SMART ring_2 420 457 IPR001841 -
Bma14g01579 481 SUPERFAMILY RING/U-box 412 463 - -
Bma14g01579 481 Pfam Zinc finger, C3HC4 type (RING finger) 418 461 - -
Bma14g01579 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 468 IPR013083 -
Bma14g01579 481 CDD RING-HC_RNFT1_like 419 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01579 Bma-Chr14:32642769 Bma07g00510 Bma-Chr7:6350088 5.95E-08 dispersed
Bma01g01704 Bma-Chr1:52703404 Bma14g01579 Bma-Chr14:32642769 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01579 - K22379 csv:101205267 730.324