Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01581 ATGGAGAGGCTCCTGTCAGAGCTAGCCATTCAAACTCCGGCGGGAGGGGAGTCTCTGTTTGCAACAATCAAAATCGCCGTACTCCCCATAGCCAAAGTTTTCACCATGTGTTTTTTGGGTTTTCTCATGGCGTCCAAGTACGTTAACATTTTGTCCGCCAGTGGAAGGCGACTTTTGAATGGGTTGGTGTTTTCACTCTTGCTTCCATGTTTGATATTCTCCCAACTTGGACAAGCTGTCACCATTGAGAAAATGCTTCAGTGGTGGTTTATTCCCATGAATGTTGTGTTGGCTACCATTTCAGGTTCACTAATAGGACTAGTTGTTGCAGCCATTATTCGTCCGCCATACCCTTTCTTTAAGTTCACAGTTGTACAAATTGGGATAGGGAACATTGGGAATGTGCCTCTTGTTTTAATTGCCGCTCTATGCAGAGACAAATCTAATCCTTTTGGTGATTCAGAGAAATGTAGCACTGATGGCACTGCCTATATTTCATTTGGCCAGTGGGTTGGTGCAATTGTTCTCTATACGTATGTATTTAGTATGTTGGCGCCTCCTGTTGAGGGAACTTTTGACATTGAAGATAGAAATATCCCAATCAAGAGCATTCCTAAGGATGGCGTGGCGGAACAAGTTCCATTGCTGGCAAAAGAGGAGGGGGAATCGACTTATACTGATACAATAAACAAGGGAAAGTCATTATGTTATAATATACTTTTGGAGTTATATTCCCTTATTACTATTTTGATGCAGTTAAAGGGCTTCTTGTGTTTTCTGTGTGAGACATTGAAGTTCAAGCAAATCCTTCAACCTCCCATTATTGCTTCTATTCTCGCCATGGTATTAGGTGCAATTCCATATTTGAAAAAATTGATCTTTACCACTGATGCTCCACTTTTCTTCTTCACTGACAGCTGCATTATTCTTGGAGAGGCGATGATTCCATGCATTCTACTTGCATTAGGAGGAAACCTTATTGATGGTCCCGGAAGTTCAAAACTTGGACTCCGAACAACCGCTGCTATTATTGTTGGGCGTTTAGTGTTGGTGCCTCCTACAGGACTTGGCATTGTCATGTTGGCTGATAAGCTTGGCTTCCTCCCTCCTGATGACAAGATGTTCCGGTTTGTTCTACTACTTCAGCATTCAATGCCCACATCAGTTCTTTCTGGTGCTGTGGCCAGTTTAAGAGGATGTGGAAGAGAAGCAGCAGCTGTGCTGTTCTGGGTTCATATTTTTGCTATCTTCTCAATGGCTGGATGGATTGTATTATACATCAACATACTCTTCTGA 1296 42.52 MERLLSELAIQTPAGGESLFATIKIAVLPIAKVFTMCFLGFLMASKYVNILSASGRRLLNGLVFSLLLPCLIFSQLGQAVTIEKMLQWWFIPMNVVLATISGSLIGLVVAAIIRPPYPFFKFTVVQIGIGNIGNVPLVLIAALCRDKSNPFGDSEKCSTDGTAYISFGQWVGAIVLYTYVFSMLAPPVEGTFDIEDRNIPIKSIPKDGVAEQVPLLAKEEGESTYTDTINKGKSLCYNILLELYSLITILMQLKGFLCFLCETLKFKQILQPPIIASILAMVLGAIPYLKKLIFTTDAPLFFFTDSCIILGEAMIPCILLALGGNLIDGPGSSKLGLRTTAAIIVGRLVLVPPTGLGIVMLADKLGFLPPDDKMFRFVLLLQHSMPTSVLSGAVASLRGCGREAAAVLFWVHIFAIFSMAGWIVLYINILF 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 32654334 32659489 - Bma012273.1 Bma14g01581 95562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01581 431 Pfam Membrane transport protein 27 423 IPR004776 GO:0016021|GO:0055085
Bma14g01581 431 PANTHER PROTEIN PIN-LIKES 2 9 431 IPR039305 GO:0080162
Bma14g01581 431 PANTHER PROTEIN PIN-LIKES 6 9 431 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01581 K24139 PILS, ECM3; auxin efflux carrier family protein - twl:120012978 677.167
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00301 Bma-Chr4:2392761 Bma14g01581 Bma-Chr14:32654334 4.39E-52 dispersed
Bma14g01581 Bma-Chr14:32654334 Bma15g00898 Bma-Chr15:30791529 4.49E-70 dispersed
Bma06g01115 Bma-Chr6:47921583 Bma14g01581 Bma-Chr14:32654334 6.52E-105 transposed
Bma01g01703 Bma-Chr1:52600768 Bma14g01581 Bma-Chr14:32654334 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g401 . . . . . . Bma14g01581 . . Cmo18g00982 . Cma18g00978 . Car18g00897 . Cpe09g00339 . . . . . . . . . . . . . . . Cone13ag0778 Cone19ag0781 . . . . . . . . . . . . . . . . Cmo15g00991 . Cma15g00951 . Car15g00895 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003172 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 6 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01581 Bma_Chr14 FPKM 1.47849 1.929363 0.528856 0.622618 0.650112 0.0 0.321072 0.271484 0.431223 0.148844