Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01592 ATGGCCGGTGGAGTGGCCGGCGACGGAGAGAGTACTCCCGGACTACTGTTGCTTGACCTTCTTCAAGACGTTATCGGTACCTCTTCTGGGATAGTCTCCAGCGACATGTTCAAGAAGGACTGTACCGATCTGGTGCGTCGGATCGCTCTCTTAAGCCACTTGTTTGAAGAGATTAGGGATTTGAAGATGGCCGGTGAATTTGGAGCTCCCGATGCGTCGACTTCGTTGCCTTCCTCTTCGAAAACCGGTAGTGGGAATGAGCTCTCCTGGCTATCGGATCTGGTTTTAGCTCTGAAGGCCGCCAAGCGACTTCTTTTCGTTGCTCGTACTTTCATTTCCGGCAATGTCTCTTCTGATGGAACTGCCAAGAAAATAGCATTCCAATTTGAATGTGTTACATGGAAGTTAGAGAAAGCATTGGGAAACATACCATTTGATCGATTTGACATCTCAGAGGAAGTTCAAGAACAGGTGGAGTTGGTAAGAGCACAATTGAGAAGAGCTGCCAAAAAGTATGGATCACCACCTTCAGTTACACAATCTGTTCTCTCTCAGGACAGAGAAATAAGCATCTTATTATCAGAGCATTTGTCAAACGATGTTTCTTTTGAGAATTCGGATAGTATAGATGATGACATTACTGTGAAGATGGATACTTTTTGCGACAGCAATACATTGATCAGCCGTAGTAATGAACAGAGAACTCAATTGTTGGAAAGATCGAGAAATGTTTCTACTTCAGATCTCTCTTCAAATGATGCTAATGCTGAAGGTCCCGGCAACTCAGTAAATGAGAGTGTGGATGAGAACAAGAAGTCTGATGCAAATATTATACCTGATGATTTTTTATGCCCCATATCTCTAGAATTAATGAGAGACCCTGTTATTGTGTCCACAGGACAGACGTATGAAAGATCCTACATTCAAAGATGGATAGATTGTGGCAACACAACATGTCCAAAAACCCAGCAGAAGCTTCAAAATTTAACTCTTACCCCGAATTACGTTCTGAGAAGTCTCATCTCTCAATGGTGCCTGAAGCACAATTTTGAACAACCAACAGGATTAACCAATGGAAAAATCAAAAAGTGTGATGGAACATATCGCGATGTTTGTGCTGAAATAGCAGCCATTGAAGCTTTGGTTTGCAAACTCTCTGGCCATTCGCTTGAGGAGCAGAGAGCAGCAGTAACTGAACTTCGATCTCTATCCAAAAGAAGTACAGATAACAGAATACTAATAGCAGAAGCTGGAGCCATTCCAGCTCTAGTCAACCTTTTAACGTCAGACGATGTCTTAATACAAGAGAATGCAGTCACTTCTATCCTTAACCTTTCGATATATGAAAACAACAAAGGACTCATCATGCTAGTTGGGGCTGTTCCTTCTATTGTCCAGGTTCTTAGGATCGGCAGCATGGAAGCTAGAGAAAATGCAGCAGCTACCCTCTTCAGCCTCTCTCTTGCAGATGAAAACCGGATAATAATTGGCGCATCTGGGGCAATCCCAGCATTGGTAGAATTGCTTCAAAACGGGAGCACGAGAGGTAAGAAAGATGCAGCCACAGCTCTATTCAATTTATGCATTTATCAGGGCAACAAAGGCCGAGCTGTAAGGGCCGGAATTGTCCTGGCCCTGTTGAAGATGCTTACGGACTCAAATTCATGCATGGTCGACGAGGCTCTTACAATAATGTCTGTTCTTGCCAATCATCAAGAAGCAAAAGTTGCCATTGTAAAAGCCAGCACCATACCAGTTTTGATCGACCTCGTGAGGACGAGTTTGCCTCGTAATAAAGAAAATTCTGCTGCCATTTTACTTGCATTGTGCAAGAGAGATTCCGAAAATCTCGCATGTATCAGTAGGCTTGGAGCCATAATACCACTAACCGAGCTTGCAAGAAGTGGCACGGAAAGAGCGAAAAGGAAAGCTAATTCATTGCTGGACCATCTTCGAAAAATACAACAGCATTAG 1974 43.41 MAGGVAGDGESTPGLLLLDLLQDVIGTSSGIVSSDMFKKDCTDLVRRIALLSHLFEEIRDLKMAGEFGAPDASTSLPSSSKTGSGNELSWLSDLVLALKAAKRLLFVARTFISGNVSSDGTAKKIAFQFECVTWKLEKALGNIPFDRFDISEEVQEQVELVRAQLRRAAKKYGSPPSVTQSVLSQDREISILLSEHLSNDVSFENSDSIDDDITVKMDTFCDSNTLISRSNEQRTQLLERSRNVSTSDLSSNDANAEGPGNSVNESVDENKKSDANIIPDDFLCPISLELMRDPVIVSTGQTYERSYIQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCLKHNFEQPTGLTNGKIKKCDGTYRDVCAEIAAIEALVCKLSGHSLEEQRAAVTELRSLSKRSTDNRILIAEAGAIPALVNLLTSDDVLIQENAVTSILNLSIYENNKGLIMLVGAVPSIVQVLRIGSMEARENAAATLFSLSLADENRIIIGASGAIPALVELLQNGSTRGKKDAATALFNLCIYQGNKGRAVRAGIVLALLKMLTDSNSCMVDEALTIMSVLANHQEAKVAIVKASTIPVLIDLVRTSLPRNKENSAAILLALCKRDSENLACISRLGAIIPLTELARSGTERAKRKANSLLDHLRKIQQH 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 32906392 32909745 + Bma012285.1 Bma14g01592 95573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01592 657 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Bma14g01592 657 CDD RING-Ubox_PUB 282 324 IPR045210 -
Bma14g01592 657 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Bma14g01592 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 356 IPR013083 -
Bma14g01592 657 Gene3D - 448 558 IPR011989 -
Bma14g01592 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 500 542 IPR000225 GO:0005515
Bma14g01592 657 Pfam Armadillo/beta-catenin-like repeat 490 528 IPR000225 GO:0005515
Bma14g01592 657 Pfam Armadillo/beta-catenin-like repeat 408 446 IPR000225 GO:0005515
Bma14g01592 657 Coils Coil 151 171 - -
Bma14g01592 657 SUPERFAMILY RING/U-box 276 351 - -
Bma14g01592 657 SMART arm_5 407 447 IPR000225 GO:0005515
Bma14g01592 657 SMART arm_5 530 570 IPR000225 GO:0005515
Bma14g01592 657 SMART arm_5 489 529 IPR000225 GO:0005515
Bma14g01592 657 SMART arm_5 571 611 IPR000225 GO:0005515
Bma14g01592 657 SMART arm_5 448 488 IPR000225 GO:0005515
Bma14g01592 657 PANTHER U BOX DOMAIN-CONTAINING 24 654 - -
Bma14g01592 657 MobiDBLite consensus disorder prediction 232 266 - -
Bma14g01592 657 Pfam U-box domain 278 348 IPR003613 GO:0004842|GO:0016567
Bma14g01592 657 SUPERFAMILY ARM repeat 371 651 IPR016024 -
Bma14g01592 657 Gene3D - 361 447 IPR011989 -
Bma14g01592 657 Gene3D - 559 657 IPR011989 -
Bma14g01592 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 459 501 IPR000225 GO:0005515
Bma14g01592 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 460 IPR000225 GO:0005515
Bma14g01592 657 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 24 654 - -
Bma14g01592 657 MobiDBLite consensus disorder prediction 232 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00183 Bma-Chr8:2239876 Bma14g01592 Bma-Chr14:32906392 1.07E-06 dispersed
Bma09g00589 Bma-Chr9:43052668 Bma14g01592 Bma-Chr14:32906392 4.84E-20 dispersed
Bma14g00501 Bma-Chr14:5627796 Bma14g01592 Bma-Chr14:32906392 5.35E-08 dispersed
Bma14g01202 Bma-Chr14:17930075 Bma14g01592 Bma-Chr14:32906392 1.32E-49 dispersed
Bma14g01592 Bma-Chr14:32906392 Bma15g00525 Bma-Chr15:6058597 4.57E-78 dispersed
Bma15g00190 Bma-Chr15:1948368 Bma14g01592 Bma-Chr14:32906392 1.27E-59 dispersed
Bma14g01592 Bma-Chr14:32906392 Bma11g00122 Bma-Chr11:1154400 6.10E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01592 - - csv:101221534 884.789