Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01594 ATGAAACTTCAATCTGGATTTCGATTTTCCCCGTTACTATTTTCTCCGATCATGTTCAAACCCTCTGCTTTCCTTTTCCTACTCCCCTCCATCTTATCCACCTTTCTCTGCCTTTTTCCTCTGCAAATCTCAGCTCGGAGTGACCACATCATCGATTTCCGATCTCCTAATCTCTATCCCGAGGGGCTCGCTTGGGACCCATTTGGTCAGCACTTTTTGGTTGGGTCTCTACACGACCGTACGATCTCCTCTGTATCCGACGCCGGCGTCGTCCAAACCCTAATCTCAGACCCTTCTCTCCCGGAAAACGTCGCTATTTTGGGTCTCGCTATCGATTCCGTCAACAAACGTCTCTTAGCCGTTATCCACGGGCTCTCACCGCTCTCTCCCTTCAACGCGCTCGCCGCTTACGACTTATCTTCCCGAAATCGGATCTTCCTCAGCCGTCTTCCTCCCGGTGACAGCGGTAGTGAATTGGGCGATGTCGCCAACGACGTCGCCGTCGATTTCAAGGGCAACGCTTACGTCACCAACTCAGGGAATAATTTTATTTGGAAAGTCAATATCGAAGGAGAGCCGTCGATTTTTTCGAGATCGAAGATGTACACAGCTAATCCGGTGTTTCCCGACGCAGAATATTCTACGTCGGGTCTAAACGGCATCGTTTACGTTAGCAAAGGGTATCTTCTGGTGGTACAATCCAATACGGGCAAGATGTTTAAGGTTGATGCGGACGACGGTACGGCGCGGCTAGTTCTGCTGAATAAAGATTTAGAAGGAGCCGACGATATCGCGATGCGCAAGAACGATGTCGTTTTGGTGGTAACGTTAAATAAGGTGTGGTTTTTGAAGAGCCACGATAGTTGGGGAGAAGGAGTGGTTTATGACGAAATTGACCTTGACGAAAAGAAGTCTCCTACTTCGGTGGTCGTGGGAGCACAGGATAGGGCATATGTGTTATATGGGTACGTGTTGGAGGGTATAAAGGTAAAAGGAGCTGAGAGGGAGAGATTTGGTATAGTGGAGGTGAGGTCACCGAAAGAAAGTGGGGAAGAGAGTGTTTGGATATACGTTTTAGTTGGACTGGGTTTGGTTTATTTCTTGGTTTGGCGATTTCAGATGAAGCGGTTGGTCAACAACTTGAACAAAAAGACCCATTAG 1161 48.23 MKLQSGFRFSPLLFSPIMFKPSAFLFLLPSILSTFLCLFPLQISARSDHIIDFRSPNLYPEGLAWDPFGQHFLVGSLHDRTISSVSDAGVVQTLISDPSLPENVAILGLAIDSVNKRLLAVIHGLSPLSPFNALAAYDLSSRNRIFLSRLPPGDSGSELGDVANDVAVDFKGNAYVTNSGNNFIWKVNIEGEPSIFSRSKMYTANPVFPDAEYSTSGLNGIVYVSKGYLLVVQSNTGKMFKVDADDGTARLVLLNKDLEGADDIAMRKNDVVLVVTLNKVWFLKSHDSWGEGVVYDEIDLDEKKSPTSVVVGAQDRAYVLYGYVLEGIKVKGAERERFGIVEVRSPKESGEESVWIYVLVGLGLVYFLVWRFQMKRLVNNLNKKTH 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 33012782 33013942 + Bma012287.1 Bma14g01594 95575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01594 386 SUPERFAMILY NHL repeat 55 319 - -
Bma14g01594 386 PANTHER - 19 385 - -
Bma14g01594 386 Gene3D - 44 346 IPR011042 -
Bma14g01594 386 PANTHER NHL DOMAIN PROTEIN 19 385 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01594 - - - csv:101209037 456.447
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00796 Bma-Chr9:46458580 Bma14g01594 Bma-Chr14:33012782 4.15E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g416 . . . . . . Bma14g01594 . Cmo04g01080 . Cma04g01002 Cma04g00059 . Car04g00057 . . . . . . . . . . Cla07g00596 Cam07g0622 Cec07g0688 Cco07g0670 Clacu07g0629 Cmu07g0654 Cre07g1000 . . . . Lsi04g01134 . . Cme10g01499 . . . . Bpe11g01606 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01040 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011671 2 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01594 Bma_Chr14 FPKM 5.503469 6.343168 4.84138 4.902157 7.856213 8.470552 8.142873 7.126263 6.383765 6.077388