Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01597 ATGTACAGGTATAATAATATTCTTTTCGCGAAGATACCGAAGTTATGTACTAGATCAAAGCATAATTTCATAGAAAAGCTTTTAGAGGTATCTAATTATGGAACAGGAAGCATTACAGATCAATCCAAGTTGCTTAATAAGGTACCAATTGTGATGGGTTATAATGGTGTTCATGGTTTGATTGATGACGACAACTGGAAAAAACATTCTGGTTTAACTTCTGCAGAAGGGGATGATTTTGATTTCGCTTTGACTTGTAAAAGATTTCCATCGATTATTTTAGGCAGCTCTCCTCAAATAAAGTTGTATGATGAAACTGCTTGTTATTCTGAAACAAACAACCTTTTGGCAATCGAAAGTTATGAAAGCTTTCTTTTGAACTCAACAAGTGAAAATAGGGCTCAGGGCTGTTTAAATGGAACATTGGCTTCACAGTGTTCAGCAAGCCTTTCAGTTCCAGGGATAGAAACTTCATCCCCAGGAGAAGAACATTCATTTGGTGATTCCACATCTTCTCATGGTGAGTTAATCCTCGACAAATGTGTCAGTTGCATTCCTGGACTAAGTAAGAGAATGTCACGTCAGCTCGAAAATTGTGGCCTGCATACGTTGCGAAAATTGTTGCACCATTTTCCGCGGACCTATGCTGATCTGCAAAATGCGCAGATTGGAATTGATGATGGACGATACTTTATTTTCTTAGGAAAGGTTTTATCCTCAAGGGGAATTAGAGCTAGTTACTCGTTTTCATTTCTAGAGGTGATCGTTGGCTGTGAGATCAAAGATATAGAATCAACTTCTGGGTACTCTATAAGTGAAGATAAAAGGGTAAAGCAGACGATTTATTTACATCTGAAGAAATATTTTCGTGGTACACGTTTTACATTTCAGCCATTTCTTAAATCCATTCAAGAAAAGCATAAAGAAGGGGAAATTGTCTGTGTTAGTGGTAAGGTAAGGAAAATGCCTACTAAAGATCACTATGAAATGAGAGAGTATAGTATTGACGTGCTTGAAAATGAAAAGGATTTGTCTTGTCACGATAAGGAGAGGTTGTATCCCATTTACCCTTCGAAGGGACGACTAAATCCTGATTCACTTAGAGATATCATTTCCAGGTCAATACAAGACTTGCCTGCTAATATTGATCCCATTCCAGAAACAACTACTAAGGAATTTGGGCTATTAAATCTTCGCGAGGCATATAGTGGAATTCATCAACCAAAGAGTATAACTGACGCAGATTGGGCTCGCAAAAGACTTATATTTGACGAGTTCTTCTACTTGCAGTTGGGACGGTTATTCCAAATGCTGGAAGGTCTTGGTACACAATTAGAGAAAGATAGTCTACTCGACAAGTTTAGCAAACCTCAACTAAATTCTGTATATATGAAGGGGTGGTCTGATCTCACGAAGAACTTTTTGAAGGCTCTTCCATATTCTCTTACTGAAAGTCAGCTCAACGCCGTTTCAGAAATTCTATGGGATTTAAAGCGACCAATCCCTATGAATCGGCTCTTGCAGGGTGATGTTGGATGTGGGAAGACAGTTGTAGCTTTTTCAGCGTGTATGGAAGTATTAGGTTCTGGATATCAGGCAGCATTTATGGTTCCAACAGAATTGCTTGCCATCCAGCATCACGAGCATTTTCTTAATTTGTTGAAGAATATGGAAGAGACTGAGATTAAACCTTCTGTTGCTTTACTAACAGGTTCAACCCCAGTAAAGCAGTCAAGGATGATTCGACAGGGACTGCAAACGGGAGAGATTTCACTAGTCATAGGAACCCACAGTTTAATATCCGAAAATGTGGAGTTCTCTGCTTTACGCCTCTGTGTGGTGGATGAGCAACATCGATTTGGTGTAATTCAGAGAGGGAGGTTTAACAGTAAGTTGTACTTTAACTCTACAAGCTCAAGAATGACAAGTGGAAATTCTGATGGATCCTCAAAGGGTGATTTCCAAATGGCCCCTCACGTTCTTGCTATGTCTGCCACTCCTATTCCGAGGACACTTGCACTGGCTTTATATGGGGATATGTCCCTTACTGAAATAACTGACTTACCTCCAGGACGAACACCAGTAAAAACTTGTACTGTTGAAGGTACTGACAATGGCTTTGAGCAAATGATGTGGAAGGAGTTAGAAGAAGGGGGGAAGGTGTATCTTGTGTATCCAATCATTGAACAATCTGAGCAGCTGCCTCAGCTTCGTGCAGCTTCGGCTGATTTTGAATTTATTTCTAACAGATTTAAGGGATACAATTGTGGTTTATTACATGGAAGGATGAAGAGTGATGAGAAAGAAGAAGCATTAAGAAAATTTAGAAATGGCCAAACACAAATTCTGCTCGCCACACAAGTTATCGAAATCGGCGTTGACGTGCCAGATGCATCCATGATGGTCGTTATGAACGCCGAGAGATTTGGAATCGCACAACTACACCAGCTTAGGGGACGAGTTGGACGTGGTGTGAAGAGTTCTAAATGCATATTTATAGCGTCTACTGCTGGCGGCCTAAATCGATTGAAGGTTGTTCTAGAAGATTCGTCGGATGCTTTTCACTTAGCGAATATTGATCTTATTTTGCGGGGACCTGGCGATTTGCTTGGTAAGAAACAGTCGGGACATCTTCCCGAGTTTCCCATTGCACGATTGGAAATAGATGGGAATATTTTACAGGAAGCACATCTCGCCGCCTTGAAAATTTTGGGAGCTTCTCATGATTTGGAGCGATTTCCTGGCCTTAAAATGGAGCTTAGTATGAGGCAGCCTCTTTGCCTTTTAGGTGATTAA 2796 40.34 MYRYNNILFAKIPKLCTRSKHNFIEKLLEVSNYGTGSITDQSKLLNKVPIVMGYNGVHGLIDDDNWKKHSGLTSAEGDDFDFALTCKRFPSIILGSSPQIKLYDETACYSETNNLLAIESYESFLLNSTSENRAQGCLNGTLASQCSASLSVPGIETSSPGEEHSFGDSTSSHGELILDKCVSCIPGLSKRMSRQLENCGLHTLRKLLHHFPRTYADLQNAQIGIDDGRYFIFLGKVLSSRGIRASYSFSFLEVIVGCEIKDIESTSGYSISEDKRVKQTIYLHLKKYFRGTRFTFQPFLKSIQEKHKEGEIVCVSGKVRKMPTKDHYEMREYSIDVLENEKDLSCHDKERLYPIYPSKGRLNPDSLRDIISRSIQDLPANIDPIPETTTKEFGLLNLREAYSGIHQPKSITDADWARKRLIFDEFFYLQLGRLFQMLEGLGTQLEKDSLLDKFSKPQLNSVYMKGWSDLTKNFLKALPYSLTESQLNAVSEILWDLKRPIPMNRLLQGDVGCGKTVVAFSACMEVLGSGYQAAFMVPTELLAIQHHEHFLNLLKNMEETEIKPSVALLTGSTPVKQSRMIRQGLQTGEISLVIGTHSLISENVEFSALRLCVVDEQHRFGVIQRGRFNSKLYFNSTSSRMTSGNSDGSSKGDFQMAPHVLAMSATPIPRTLALALYGDMSLTEITDLPPGRTPVKTCTVEGTDNGFEQMMWKELEEGGKVYLVYPIIEQSEQLPQLRAASADFEFISNRFKGYNCGLLHGRMKSDEKEEALRKFRNGQTQILLATQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGVKSSKCIFIASTAGGLNRLKVVLEDSSDAFHLANIDLILRGPGDLLGKKQSGHLPEFPIARLEIDGNILQEAHLAALKILGASHDLERFPGLKMELSMRQPLCLLGD 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 33050792 33063747 - Bma012290.1 Bma14g01597 95578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01597 931 TIGRFAM recG: ATP-dependent DNA helicase RecG 199 899 IPR004609 GO:0003678|GO:0006281|GO:0006310
Bma14g01597 931 Pfam ATP-dependent DNA helicase RecG, domain 3, C-terminal 851 908 IPR045562 -
Bma14g01597 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 689 IPR027417 -
Bma14g01597 931 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 3 931 - -
Bma14g01597 931 Pfam DEAD/DEAH box helicase 503 670 IPR011545 GO:0003676|GO:0005524
Bma14g01597 931 Gene3D - 696 864 IPR027417 -
Bma14g01597 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 689 880 IPR027417 -
Bma14g01597 931 Gene3D - 440 686 IPR027417 -
Bma14g01597 931 Pfam Helicase conserved C-terminal domain 713 824 IPR001650 -
Bma14g01597 931 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 706 862 IPR001650 -
Bma14g01597 931 SUPERFAMILY Nucleic acid-binding proteins 178 377 IPR012340 -
Bma14g01597 931 SMART helicmild6 745 825 IPR001650 -
Bma14g01597 931 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 3 931 - -
Bma14g01597 931 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 496 685 IPR014001 -
Bma14g01597 931 SMART ultradead3 478 696 IPR014001 -
Bma14g01597 931 CDD DEXHc_RecG 421 689 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01597 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] - csin:114290287 1298.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01430 Bma-Chr14:27298469 Bma14g01597 Bma-Chr14:33050792 1.19E-14 dispersed
Bma14g01597 Bma-Chr14:33050792 Bma07g00227 Bma-Chr7:2674517 6.82E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g422 . . . . . . Bma14g01597 . . . . . . . . . . . . . . . . . Cla07g00622 Cam07g0642 . Cco07g0699 . Cmu07g0670 Cre07g1019 Cone13ag0764 . . . Lsi04g01153 . . Cme10g01515 . Blo11g00729 . . Bpe11g01604 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006958 1 2 1 1 1 2 1 2 1 0 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01597 Bma_Chr14 FPKM 15.137359 15.110256 14.875717 13.587797 13.144506 11.850557 14.41112 16.995878 13.504731 17.118351