Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01623 ATGGATTACGAGAGGATCCTCAAGCCTCAGGGAAGTGTTGGAGGTGGATTCTCACCAGGGAAACTGAGGACTATGATACTGGGCTTAGAGAAGAAAAGGAAAGAGGAGGGAGAGGAGCTTGAATCAACCTACACATCTAGATCTCAGATTTCTCAGATTGAGGAAGCAGGTGGTAGCAGTAACGATAATTACAAAGATGTAGATATGGTTAGTATTATGTCAGAATGCTCAAAAACAGCTGGATCATTAGGCTCAGAGGTGTTTAATGAGCATCGATCGAAGGATGCCACACTAGGAAATTCAAGAATTAAAACCCAAGAAGATCCTACTTTAGATTATGATTGCGGCCTTGATATTGCAAATTTACCTTTGTCAGCCTTTGAGTTTCAGAAGGGAGAGAGGTCTTCAAGAGTCCCGTTGGCACCTTTCTCTAAGCCGGCACCATCCAAATGGGATGATGCCCAAAAATGGATAGCTAGTCCAACTTCAAACAGGCCAAAGGCTGGGCAGTCTCAGGGGCAAGTTGTTGGATCACGAAAGGTTAGTAGTGTTGGTTATGGAATTCGACATCCATCCGCAAAGGTTGTTATTGAAGTTCCTGATCAAAATGGGGTGGCTTTTGAAGAACCAGATACCAAACAGATGGATACCAACCAAACCAAGTTGGAAAGAGATGGTCAGAAGTTTGCTAGTTGGGAAGATCATGTTCATCCATGTCCAACCGGAGATTCATATTCTAAGCCTGTGCCCATGATTGAAAACTCCATTGGAGAGTGTGCCGTAAATGTTAGCCGCTACAATACATCTGTGGGCATCCAGAGTGCAACTACTTTAATTCCCCCTCCTTCGACAGCTCGATCTGTATCAATGAGAGATATGGGTACAGAAATGACCCCTATTGCTAGCCAAGAACCTTCAAGAACTGGAACTCCTGTGAGGGCGACAACACCAATGCGCAGTCCTACTTCTTCTCGACCATCAACCCCTGAGAGGTCTGCACCATCTTCGACTCCCATAAATCCTCCTTTACTCAATGACCAAGTGTTTCCTAATAAGGAGTTGTCTGAGAAGGAGCTGCAACTTAAAACAAGGAGGGAGATTATGGTTTTAGGTACACAATTAGGAAAAATGAATATTGCTGCATGGGCTAGCAAAGAGGAGGAAGATAAGGATGCATCTACTTCGCTAAAAACTATTGCAACACCACAGCTGAATAAAAGTGTGATCGAGACACGTGCAGCAGCATGGGAGGAGGCTGAGAAAGCCAAGTATATGGCAAGGTTCAAGCGTGAAGAATTGAAAATTCAAGCATGGGAAAATCACCAGAAAGCAAAAGCAGAGGCTGAAATGAAGAAAATGGAGGTAGAGGTAGAGAGGATTAGGGGGCGAGCTCATGATAAGCTTATGAATAAATTAGCATCGGTGAGGCACAAAGCAGAAGAAAAGAGAGCTAATGCGGAAGCAAAGAGAAGCCGCAAAGCTGTAAAAACCGAGCAACAAGTAGATTACATTCGCAGGACAGGACACATTCCTTCTGGATGCTCCTGCTGTTGGTGA 1557 44.32 MDYERILKPQGSVGGGFSPGKLRTMILGLEKKRKEEGEELESTYTSRSQISQIEEAGGSSNDNYKDVDMVSIMSECSKTAGSLGSEVFNEHRSKDATLGNSRIKTQEDPTLDYDCGLDIANLPLSAFEFQKGERSSRVPLAPFSKPAPSKWDDAQKWIASPTSNRPKAGQSQGQVVGSRKVSSVGYGIRHPSAKVVIEVPDQNGVAFEEPDTKQMDTNQTKLERDGQKFASWEDHVHPCPTGDSYSKPVPMIENSIGECAVNVSRYNTSVGIQSATTLIPPPSTARSVSMRDMGTEMTPIASQEPSRTGTPVRATTPMRSPTSSRPSTPERSAPSSTPINPPLLNDQVFPNKELSEKELQLKTRREIMVLGTQLGKMNIAAWASKEEEDKDASTSLKTIATPQLNKSVIETRAAAWEEAEKAKYMARFKREELKIQAWENHQKAKAEAEMKKMEVEVERIRGRAHDKLMNKLASVRHKAEEKRANAEAKRSRKAVKTEQQVDYIRRTGHIPSGCSCCW 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 34219764 34223682 - Bma012330.1 Bma14g01623 95604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01623 518 Coils Coil 443 463 - -
Bma14g01623 518 Pfam Remorin, C-terminal region 409 512 IPR005516 -
Bma14g01623 518 PANTHER OS02G0116800 PROTEIN 15 516 - -
Bma14g01623 518 Coils Coil 465 498 - -
Bma14g01623 518 PANTHER OS02G0116800 PROTEIN 15 516 - -
Bma14g01623 518 MobiDBLite consensus disorder prediction 43 64 - -
Bma14g01623 518 MobiDBLite consensus disorder prediction 297 349 - -
Bma14g01623 518 MobiDBLite consensus disorder prediction 31 64 - -
Bma14g01623 518 MobiDBLite consensus disorder prediction 299 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01623 - - - zju:107429597 635.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma14g01623 Bma15g00051 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01623 Bma-Chr14:34219764 Bma15g00051 Bma-Chr15:673307 0 dispersed
Bma04g00162 Bma-Chr4:1403181 Bma14g01623 Bma-Chr14:34219764 2.06E-14 transposed
Bma04g01519 Bma-Chr4:51219942 Bma14g01623 Bma-Chr14:34219764 5.74E-13 transposed
Bma07g00772 Bma-Chr7:22553877 Bma14g01623 Bma-Chr14:34219764 9.43E-70 transposed
Bma11g00825 Bma-Chr11:25774512 Bma14g01623 Bma-Chr14:34219764 1.27E-15 transposed
Bma14g01133 Bma-Chr14:14907620 Bma14g01623 Bma-Chr14:34219764 1.66E-113 transposed
Bma15g00240 Bma-Chr15:2415279 Bma14g01623 Bma-Chr14:34219764 6.63E-15 transposed
Bma05g00037 Bma-Chr5:2135901 Bma14g01623 Bma-Chr14:34219764 1.76E-18 transposed
Bma11g00890 Bma-Chr11:33624689 Bma14g01623 Bma-Chr14:34219764 1.85E-47 transposed
Bma14g01602 Bma-Chr14:33537039 Bma14g01623 Bma-Chr14:34219764 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1078 . . . . . . Bma14g01623 Bma15g00051 . . . . . . . . . Bhi07g00089 . . . . . . . . . . . . . Cone13ag0667 Cone19ag0663 . . . . . Cme10g01363 . . . . Bpe11g01616 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00962 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009661 2 1 2 3 1 1 1 0 1 1 1 1 0 1 1 0 1 2 0 1 2 1 1 1 1 0 0 1 4 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01623 Bma_Chr14 FPKM 18.187944 23.04414 4.261632 2.805846 4.205464 0.0 2.835195 4.973135 9.444782 7.737202