Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01624 ATGGAGGATGTCACCGGAAATGTGGTACGGTCGACGGTGATGGCGCACAAGATGATCAACGGATTCTCATGGTGGGAAGACATCAACGATTCTCGTGTTTGGCAGGACCGTATATTTCATGTTCTCGCTGTTCTTTATGCCTTAGTGGCTGCTGTTGCTTTCGTTCAATTGGTGAGGATACAACTGAGGGTACCTGAATATGGTTGGACCACTCAGAAGGTCTTCCACTTTCTCAATTTTTTGGTTAATGGAGTACGATCTGTAGTTTTTATATTTCGCCGCAACATTCAGAAGTTGGAACCTCAGATTGTTCAGCATATCTTGCTTGATATGCCAAGCCTTGCTTTCTTCACAACTTATGCTCTGTTGGTTCTGTTCTGGGCAGAGATTTACTATCAGGCTCGTGCTGTTTCTACTGATGGGCTGAGGCCAACTTTCTACACCATAAATGCAGTGGTTTATGTTGTGCAGTTTGTTCTATGGCTGGTATTGTGGTGGAAACCAATCCCTTTGTTGGTCATCCTTTCAAAGATATTTTTTGCAGGTGTGTCTTTGTTTGCTGCCCTTGGGTTTCTACTTTATGGTGGAAGACTCTTCTTGATGTTACAGCGATTCCCAGTAGAATCTAAAGGAAGGCGGAAGAAGTTGCAAGAGGTCGGCTATGTCACCACTATATGCTTTTGTTGTTTCCTTGTAAGATGCGTTATGATGTGCTTTAATGCTTTTGATAAAGCTGCGGATCTTGATGTTTTGAATCATCCAGTGCTAAACTTTATTTATTATCTCTTGGCCGAGATCCTACCTTCTTCTTTAGTCCTCTTCATATTAAGGAAGTTACCCCCTAGGCGTGGGATCACTCAATATCATCCTATACGCTAA 879 42.66 MEDVTGNVVRSTVMAHKMINGFSWWEDINDSRVWQDRIFHVLAVLYALVAAVAFVQLVRIQLRVPEYGWTTQKVFHFLNFLVNGVRSVVFIFRRNIQKLEPQIVQHILLDMPSLAFFTTYALLVLFWAEIYYQARAVSTDGLRPTFYTINAVVYVVQFVLWLVLWWKPIPLLVILSKIFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFCCFLVRCVMMCFNAFDKAADLDVLNHPVLNFIYYLLAEILPSSLVLFILRKLPPRRGITQYHPIR 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 34253079 34261567 + Bma012331.1 Bma14g01624 95605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01624 292 PANTHER TOBAMOVIRUS MULTIPLICATION PROTEIN 3 10 292 - -
Bma14g01624 292 Pfam THH1/TOM1/TOM3 domain 23 292 IPR009457 -
Bma14g01624 292 PANTHER TOBAMOVIRUS MULTIPLICATION PROTEIN 1-LIKE ISOFORM X1 10 292 IPR040226 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01624 - - - nnu:104592725 473.781
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00029 Bma14g01624 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01076 Bma-Chr10:30706534 Bma14g01624 Bma-Chr14:34253079 1.12E-116 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1077 . . Bda01g02198 . . . Bma14g01624 . Cmo04g01053 . . . Car04g00918 . . . . Bhi07g00090 . . . . . . . . . . . . . Cone13ag0666 . . . . . . Cme10g01366 . . . . Bpe11g01617 . Bma01g00029 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00964 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007319 0 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 3 1 1 1 1 0 0 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01624 Bma_Chr14 FPKM 23.589087 22.667746 19.404545 16.855434 42.897514 50.429401 44.647484 20.949604 26.130972 22.74222