Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01625 ATGAATGCCAATACCACCGTCTCCGCCGGTGAGATTTTTTCTAAGGAAACTTCCTTAACCATGGAGCTTTTCTCGGATGATTTTGAGGGAAGGAAACGGGGAGAGCGTCTAATATCAGAAAATCTTGGCGGGGATCATGTAAGTAAATCTTCCAAAGGTTGTTTTGATAAAGAATCGGAAAAGAATCGGTTCAAGGTCGATGATGTCAAAGAATCAGAAATTTTCTTTCCCTCAATGGCTGAAGATAGATTTCAAAATATTGCGGCAGAAAATAATGAATCAGATTATGGTTTACAAATCGTTACCTATTCTGGCGTCGTCGTAGAGCCGCATTCACAGCTCCCCAAGCCGGAGGCGCCACCCGGACTTTCCGATTCCCCTGCATCAAACGGTGACTTTAACTACCATAGATCACAATCCATGACAGAAAACTTCACCGTAGACATGCCGGCAATCGGGAAATTCATTCGTGAGAGAAGTAATACCTTCTCGGCAGCGATCGTAAAGAGGCTCTCATCTCTCAAAGACGAAAACGATGAAGTGGCTGACGACTATAAGACCAACTCCGGAGTGACGGAGTTCAATCTTTCTGGACTGAAGGTGATTGTCAAGCTAAAGCGTGACGAAAATAGATACAAAGAGCTCAAAGGCCGAGTCAGCTTCTTCTCGAAGTCGAATTGCAGGGATTGCACAGCTGTTCGGAAATTCTTTAGAGAGAAAGGACTCAAATACGTGGAGATAAACATCGATGTGTACCCTCAAAGAGAAGAGGAGCTGGTAAAATTAACCGGAGGTTCATCCGTTCCTCAGATATTCTTCAACGAAAAGTTATTCGGAGGGTTGGTGGCTTTAAATTCTCTGAGAAACAGTGGAGAATTCGACAAGAGGTTAAAGGAGATGCTGAGTAGTAAATGTCCGGACGATGCTCCGGCGCCCCCTGTTTACGGGTTCGATGATCTCGAAGTGGGGTCCATAGACGAATTGATCGGCATCGTCAAATATTTACGGCAGAGATTACCTATTCAGGACCGCTTAATGAAGATGAAAATCATCAAAAACTGCTTCTCCGGGAGCGAGATGGTGGAGGTACTCATTCAACACTTGGATTGCGGCCGTCGAAAGGCAGTTGATTTGGGCAAGAAGCTGGCCCAGAGGCACTTCATCCAACATGTTTTCGGGGAAAATGGTTTTTTAGATGGCAACCATTTCTATCGTTTTCTTGAGCATGGACCTTCGATTCCCAGATGCTTTAATTTTCGTGGATCAACGAACGACTACGAGCCCAAGCCAGCCGCTGAGATTGGCCGCAAGCTTACCAAGATCATGTCTGCAATCCTCGACTCTTATGCCTCAGACGACAGACGCCACCTCGATTATCTTGGCATCAGCAACAGCGAAGAATTCCGCAGGTATGTGAATCTGGTGCAAGAACTTCACCGAGTGAACCTCCACGAACTCTCCAAGAATGAAAAGCTGGCATTCTTCTTGAATTTATATAATGCAATGGTAATCCATGGACTGATCAGATTAGGACACCCGGAAGGCGTAATTGACAGAAGATCCTTCCACTCTGATTTTCAGTACTTGGTCGGGGGTCATCCTTTTTCTCTGAGTTCCATTAAAAATGGCATCCTAAGAGCTAACAGAAGACCTCATTTTTCATTGGTAAGGCCCTTTAGCAGTGGAGACAAGCGCTTGGAGCTTGCGTTCGAAAAAGTGAACCCAATAATCCACTTCGGACTCTGTGATGGAACAAGGTCAAGTCCCACGGTGAAGTTCTTCACTGCTCAAGCAGTAGAAAGTGAATTAAGATGCGCAGCTAGAGACTTCTTTCGGAACGGAGGAATTGAGGTGGATTTGGACAAAAGAACTGTTCATCTCTCTGGAATTATCAAGTGGGTAATTGGAGATTTTGGACAAGAAAAAGAAGTACTGAAATGGGTGATGAATTACTTGGATGCAACTAAAGCAGGTCTTTTGACACATCTTGTAGAAGACGGCGGCCCCGTTAACATCTCCTACCAACCTTATGATTGGTCTCTTAATTCCTACTCCCTCCAAATTCTGGCCTAA 2073 44.86 MNANTTVSAGEIFSKETSLTMELFSDDFEGRKRGERLISENLGGDHVSKSSKGCFDKESEKNRFKVDDVKESEIFFPSMAEDRFQNIAAENNESDYGLQIVTYSGVVVEPHSQLPKPEAPPGLSDSPASNGDFNYHRSQSMTENFTVDMPAIGKFIRERSNTFSAAIVKRLSSLKDENDEVADDYKTNSGVTEFNLSGLKVIVKLKRDENRYKELKGRVSFFSKSNCRDCTAVRKFFREKGLKYVEINIDVYPQREEELVKLTGGSSVPQIFFNEKLFGGLVALNSLRNSGEFDKRLKEMLSSKCPDDAPAPPVYGFDDLEVGSIDELIGIVKYLRQRLPIQDRLMKMKIIKNCFSGSEMVEVLIQHLDCGRRKAVDLGKKLAQRHFIQHVFGENGFLDGNHFYRFLEHGPSIPRCFNFRGSTNDYEPKPAAEIGRKLTKIMSAILDSYASDDRRHLDYLGISNSEEFRRYVNLVQELHRVNLHELSKNEKLAFFLNLYNAMVIHGLIRLGHPEGVIDRRSFHSDFQYLVGGHPFSLSSIKNGILRANRRPHFSLVRPFSSGDKRLELAFEKVNPIIHFGLCDGTRSSPTVKFFTAQAVESELRCAARDFFRNGGIEVDLDKRTVHLSGIIKWVIGDFGQEKEVLKWVMNYLDATKAGLLTHLVEDGGPVNISYQPYDWSLNSYSLQILA 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 34280225 34284587 + Bma012332.1 Bma14g01625 95606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01625 690 CDD GRX_DEP 217 289 - -
Bma14g01625 690 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 339 406 IPR000591 GO:0035556
Bma14g01625 690 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 83 683 - -
Bma14g01625 690 SUPERFAMILY Thioredoxin-like 217 299 IPR036249 -
Bma14g01625 690 MobiDBLite consensus disorder prediction 111 131 - -
Bma14g01625 690 Pfam Glutaredoxin 220 277 IPR002109 -
Bma14g01625 690 Gene3D - 325 452 IPR036388 -
Bma14g01625 690 CDD DEP 327 405 - -
Bma14g01625 690 ProSiteProfiles Glutaredoxin domain profile. 207 304 - -
Bma14g01625 690 ProSiteProfiles DEP domain profile. 335 408 IPR000591 GO:0035556
Bma14g01625 690 SMART DEP_3 335 408 IPR000591 GO:0035556
Bma14g01625 690 PANTHER F26K24.21 PROTEIN 83 683 - -
Bma14g01625 690 Pfam Protein of unknown function, DUF547 484 610 IPR006869 -
Bma14g01625 690 SUPERFAMILY Winged helix DNA-binding domain 326 427 IPR036390 -
Bma14g01625 690 Gene3D Glutaredoxin 215 301 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01625 - - - csv:101218879 881.322
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01625 Bma-Chr14:34280225 Bma13g01170 Bma-Chr13:45014997 1.02E-22 dispersed
Bma14g01625 Bma-Chr14:34280225 Bma15g00852 Bma-Chr15:22320991 7.61E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1073 . . . . . . Bma14g01625 . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0665 Cone19ag0662 . . . . . . . . Bda07g01448 . Bpe11g01619 . . . . . Cmo15g00895 . Cma15g00860 . Car15g00811 . . . . . . . . . . . . . . . . . . Chy09g00445 Cme09g01240
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007007 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01625 Bma_Chr14 FPKM 5.688597 5.263754 5.978622 6.343471 7.153211 6.327615 5.825197 7.067804 8.099263 9.339641