Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01627 ATGGATGATGATGGGCTAAATATGCGGAATTGGGGTTACTACGAGCCGTCATTCAAGGGCCATCTTGGACTTCAGCTCATGTCGACCATGGCAGATCGCGATTCAAAGCATTATCTCCCCGGGTGCGATCCTCTTGTCTTTTTCAGCTCCTCTCATGGAGGTTTTCCGGGTCGAGACTCCATAATTCCAGTAGCACCAGTCCATATGAACCATCAGAGGGATGGTTGGATAAACCATGGAGAGAAATTTCTCAACTCCAACAATGGATTCCTTCTGCAAAATCCTATTGCTCATCCTCTGCAGAGTCTACCATCTCAAGCATTGCAGGATGATATGGTCGGAAGAGATGTTGAACAAACTCCGTCGAAAAGGGGCGGTAGAAAACGTTCACCAAAACTCCTGAAAGCTAAAAAGGCTAAGACGTCGAAGGAGAACTCTCCAATCGTTCAACGCATTAAACCGGCTAAGAAGTGCATAGAATTGGTGATAAACGGGATCGATTTGGACCTTTCGGATATCCCTGTTCCAACCTGCTCTTGCACCGGAACGGCTCAGCAATGTTACCGGTGGGGCTATGGGGGCTGGCAATCAGCTTGTTGCACCCCAAATATGTCTATGCATCCTCTCCCGATGAACACCAAGCGGCCGGGAGCAAGGATTGCTGGCAGGAAAATGAGCCAGGGCACATTCAAGAAGGTGTTGGAGAAACTCGCATCTGAAGGTTATAATTTTGCGAATTCGATTGATTTAAGGACTCACTGGGCAAGACATGGTACCAACAAATTTGCCACAATTAGGTAG 801 47.57 MDDDGLNMRNWGYYEPSFKGHLGLQLMSTMADRDSKHYLPGCDPLVFFSSSHGGFPGRDSIIPVAPVHMNHQRDGWINHGEKFLNSNNGFLLQNPIAHPLQSLPSQALQDDMVGRDVEQTPSKRGGRKRSPKLLKAKKAKTSKENSPIVQRIKPAKKCIELVINGIDLDLSDIPVPTCSCTGTAQQCYRWGYGGWQSACCTPNMSMHPLPMNTKRPGARIAGRKMSQGTFKKVLEKLASEGYNFANSIDLRTHWARHGTNKFATIR 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 34310533 34311333 - Bma012334.1 Bma14g01627 95608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01627 266 PANTHER PROTEIN BASIC PENTACYSTEINE1-RELATED 1 266 - -
Bma14g01627 266 Pfam GAGA binding protein-like family 105 266 IPR010409 -
Bma14g01627 266 Pfam GAGA binding protein-like family 1 87 IPR010409 -
Bma14g01627 266 MobiDBLite consensus disorder prediction 114 147 - -
Bma14g01627 266 SMART GAGA_bind_2 1 266 IPR010409 -
Bma14g01627 266 PANTHER - 1 266 IPR010409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01627 - - - mnt:21402222 340.117
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00750 Bma14g01627 CCT
Bma14g01627 Bma15g00100 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01627 Bma-Chr14:34310533 Bma15g00055 Bma-Chr15:723084 2.38E-133 dispersed
Bma14g01627 Bma-Chr14:34310533 Bma14g01628 Bma-Chr14:34336298 4.26E-124 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1021 . Blo16g01070 . . Bpe13g01357 Bpe10g00923 Bma14g01627 Bma15g00100 Cmo04g01636 Cmo18g01096 Cma04g00989 Cma18g01074 Car04g01617 Car18g00997 Sed06g1827 Cpe09g00249 Cpe01g01390 Bhi07g01419 Tan04g0937 Cmetu09g1500 Lac13g0423 Hepe10g1837 . . Cla05g02362 Cam05g2533 Cec05g2562 Cco05g2601 Clacu05g2528 Cmu05g2388 Cre05g2504 . . . . Lsi04g00324 Csa05g02545 Chy10g01085 Cme10g00324 Blo06g00950 Blo11g00811 Bda07g01496 . Bpe11g01623 . . Bma06g00750 . . Cmo15g00873 . . . Car15g00216 Cpe13g00999 . . . . . . . . . . . . . . . . . Chy09g00171 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma15g00056 . 1 280 BBR/BPC Transcription factor family AT2G01930 55.7 8.0e-83 303.9
Bma14g01628 . 1 281 BBR/BPC Transcription factor family AT2G01930 54.0 1.7e-77 286.2
Bma15g00055 . 1 278 BBR/BPC Transcription factor family AT2G01930 55.0 3.6e-75 278.5
Bma14g00072 . 50 222 BBR/BPC Transcription factor family AT2G35550 59.9 6.7e-56 214.2
Bma14g01628 . 161 281 BBR/BPC Transcription factor family AT2G35550 56.2 3.9e-40 161.8
Bma15g00056 . 160 280 BBR/BPC Transcription factor family AT2G35550 56.2 8.7e-40 160.6
Bma14g01627 BCT,CCT 146 266 BBR/BPC Transcription factor family AT2G35550 53.7 6.3e-38 154.5
Bma08g00777 . 163 269 BBR/BPC Transcription factor family AT2G35550 57.9 6.9e-37 151.0
Bma15g00056 . 1 280 BBR/BPC Transcription factor family AT1G68120 52.4 5.3e-76 281.2
Bma14g00072 . 101 222 BBR/BPC Transcription factor family AT1G68120 51.2 9.7e-38 154.1
Bma08g00777 . 102 269 BBR/BPC Transcription factor family AT2G21240 66.9 5.6e-63 238.0
Bma03g01393 . 1 273 BBR/BPC Transcription factor family AT2G21240 60.7 2.4e-61 232.6
Bma08g00777 . 1 269 BBR/BPC Transcription factor family AT4G38910 58.0 2.0e-57 219.5
Bma03g01393 . 100 273 BBR/BPC Transcription factor family AT4G38910 60.0 3.0e-53 205.7
Bma01g00731 . 88 336 BBR/BPC Transcription factor family AT5G42520 56.4 2.2e-72 269.2
Bma03g01393 . 157 273 BBR/BPC Transcription factor family AT5G42520 70.6 3.0e-45 179.1
Bma14g00072 . 50 222 BBR/BPC Transcription factor family AT2G35550 59.9 6.7e-56 214.2
Bma14g01628 . 161 281 BBR/BPC Transcription factor family AT2G35550 56.2 3.9e-40 161.8
Bma15g00056 . 160 280 BBR/BPC Transcription factor family AT2G35550 56.2 8.7e-40 160.6
Bma14g01627 BCT,CCT 146 266 BBR/BPC Transcription factor family AT2G35550 53.7 6.3e-38 154.5
Bma08g00777 . 163 269 BBR/BPC Transcription factor family AT2G35550 57.9 6.9e-37 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002345 4 2 3 4 4 1 2 1 1 0 1 1 3 2 2 4 1 2 2 1 2 2 2 2 1 1 2 5 3 1 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58403 PF06217 GAGA_bind 1.10E-72 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01627 Bma_Chr14 FPKM 4.017779 4.484234 3.148412 3.204384 2.019336 2.533668 2.515518 2.872522 2.947059 2.21712