Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01634 ATGGCACAAGAACAGGAGGCAAAGAAAAGCTCTACACTCTCAAACTGTGATCTTTACTTTCAAACCATCCAATCGAGGAAGAAATTACCACAAGCATTGCAGGAGACACTGACAGATGCATTTTCGAGGATTCCGGTTTCATCATTTCCGGGTGTTCCTGGAGGCAAAGTGATTGAGATTCTGGCAGATACAACTATAGCTGATGCAGTTAAAATTCTATCTGAATGCAACATTTTATCAGCTCCTGTTAAGAACCCTGAAGCAGAAACGAGTTTAAATTGGAAGGAAAGATACCTGGGAATCATAGACTATTCCTCCATTATCTTGTGGGTGTTGGAGAATGCGGAGCTTGCAGCCGTAGCTCTCTTGGCCAGCTCCGCAACAGCAGCCGGAGTTGGTGCCGGTGCAGTGAGTGCACTCGGAGCGTTGGCTTTCGGCATGACGGGTCCAGTTGCAGTAGCCGGAGTTACTGCAGCTGCAGTTGGGGCTGCCGTCGCTGGAGGTATGGTGGCCGATAAAGGGATGGGCCGAGATGCTCCAACTGCTGCTGATGAACTGGGGGAGGATTTTTACAAAGTAATACTTCGAGAAGAGCCCTTCAAATCAACCAAAGTGAGGTCGATTTTGAGATCTTTCCGGTGGGCTCCGTTTCTTCCTGTGACATCCGACAGTTCAATGTTGAGCGTATTATTATTACTCTCCAAATACAGGTTAAGAAATGTGCCTGTTATTGAACCAGGCAAGCCTGACATCAAGAACTACATAACTCAATCTGCAGTAGTACAGGGTCTTGAAGGGTGCAGAGGAAGGGATTGGTTCGACTGTATATCCGCCAAACCGATTTCCGATTTAGGCCTTCCTTTCATGTCCTCTACCGAGGTTATTAGTATCCAAAGCGATGATCTTATACTGGAAGCCTTCAAGAGAATGAGAGATAATCAAATTGGTGGTCTTCCAGTTGTGGAGGGGCCAAGTAAAAAGATAGTGGGGAATATAAGCATCAGAGATATTCGACATTTACTGCTGAAACCCGAACTTTTCTCTAATTTCAGGAAGCTGAGTGTGATGGGTTTTATTAACACAATCATATCGACGAAGCAAGAAACCAGAAACATTTTCCCACCGATTACCTGCAAACTCGATTCGACTCTCGGGTCTGTAATCCGCAGTTTAGCCTCCAACTCATTTCACAGGATACATGTGGTTGATGGAGAGGAAGGTGAAGTTGTTGGGGTCATTACACTTCGAGATGTGATTTCTTGCTTCATCTACGAGCCGCCTAATTATATCGAGGAAAATTTTGGATTTGCGGTAAAAGAAATGTTGAATGGCGAAGCCGAATAG 1344 45.24 MAQEQEAKKSSTLSNCDLYFQTIQSRKKLPQALQETLTDAFSRIPVSSFPGVPGGKVIEILADTTIADAVKILSECNILSAPVKNPEAETSLNWKERYLGIIDYSSIILWVLENAELAAVALLASSATAAGVGAGAVSALGALAFGMTGPVAVAGVTAAAVGAAVAGGMVADKGMGRDAPTAADELGEDFYKVILREEPFKSTKVRSILRSFRWAPFLPVTSDSSMLSVLLLLSKYRLRNVPVIEPGKPDIKNYITQSAVVQGLEGCRGRDWFDCISAKPISDLGLPFMSSTEVISIQSDDLILEAFKRMRDNQIGGLPVVEGPSKKIVGNISIRDIRHLLLKPELFSNFRKLSVMGFINTIISTKQETRNIFPPITCKLDSTLGSVIRSLASNSFHRIHVVDGEEGEVVGVITLRDVISCFIYEPPNYIEENFGFAVKEMLNGEAE 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 34493193 34512146 + Bma012345.3 Bma14g01634 95615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01634 447 CDD CBS_pair_SF 291 419 - -
Bma14g01634 447 Gene3D - 276 425 IPR046342 -
Bma14g01634 447 SUPERFAMILY CBS-domain pair 275 431 IPR046342 -
Bma14g01634 447 Pfam CBS domain 290 342 IPR000644 -
Bma14g01634 447 Pfam CBS domain 374 420 IPR000644 -
Bma14g01634 447 SUPERFAMILY CBS-domain pair 36 262 IPR046342 -
Bma14g01634 447 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 8 443 - -
Bma14g01634 447 Gene3D - 53 267 IPR046342 -
Bma14g01634 447 ProSiteProfiles CBS domain profile. 368 432 IPR000644 -
Bma14g01634 447 SMART cbs_1 216 265 IPR000644 -
Bma14g01634 447 SMART cbs_1 56 112 IPR000644 -
Bma14g01634 447 SMART cbs_1 374 423 IPR000644 -
Bma14g01634 447 SMART cbs_1 293 342 IPR000644 -
Bma14g01634 447 CDD CBS_pair_SF 56 113 - -
Bma14g01634 447 ProSiteProfiles CBS domain profile. 51 117 IPR000644 -
Bma14g01634 447 ProSiteProfiles CBS domain profile. 289 348 IPR000644 -
Bma14g01634 447 PANTHER BNAANNG38820D PROTEIN 8 443 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01634 - - - tcc:18610472 622.854
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00639 Bma-Chr9:43780653 Bma14g01634 Bma-Chr14:34493193 6.37E-77 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g862 . . . . . . Bma14g01634 . Cmo04g01714 Cmo18g01195 . Cma18g01170 . Car18g01079 Sed08g0035 Cpe09g00157 Cpe01g01449 Bhi07g01598 Tan04g1112 Cmetu10g1744 Lac13g0290 . . . Cla05g02467 Cam05g2652 Cec05g2687 Cco05g2721 Clacu05g2656 Cmu05g2508 Cre05g2624 . Cone19ag0967 . . Lsi04g00452 Csa05g02423 Chy10g00979 Cme10g00442 . . Bda07g01459 . Bpe11g01631 . . . . . . Cma04g01636 . Car04g01677 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009000 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 0 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01634 Bma_Chr14 FPKM 10.247387 11.825233 10.838742 12.087785 15.017359 14.664507 15.295394 13.826628 13.640541 12.781757