Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01643 AGAGAGAGAGAGATGGAAGGAAGTAAGAGTGAAGTGACAGTGTTTGGAACATGGTATAGTTCTTGCTGCAACAGAGTGTTGTTAGCCCTTAAACTCAAGGGCATACCTTATGAGTATGTAGAAGAAGATTTGAACTCTAAAAGTGAACTGCTTCTCCGTTACAACCCTGTCCACAAGAAGGTTCCTGTTCTTGTCCACAAAGGCAAGCCCCTGGCTGAATCTCTTACCATCCTTGAATACATCGACGAATGTTGGAATCAAGCTCCTAAATTACTCCCGGACGATCCTTATCAGAGATCCAAAGTCCGCTTTTGGGTGCAATTTTATGATAAAAAAATCAGGCCCGCGACACTCCCGATCATCAAATCAGAGGGGGAGGAGCGAGAAAAAGCAATAGAAGAATTCAACAAGTTGTTGAGTGTTTTCGAAGAAGGAACCGAGAAAGATTTTCCCGGAGAATTCGAGTTCTTCTGCAGTGATAACTTAGGACTTCTAGAGATTGTCGTGGGTGTAAATGCTTGTAATTATAAAGCATTTCAGCAGGTCATTGGAGAAGTTATTGGACCAGAAAAGAATCGTGCATTTTTTTCGAAGGTAAAAGCTTTAGAGAAACACCCTCTGATGAAGGAGACGATTCCTCCTCACCAGCAATTGGTGGCCAAGATGGCTGATAAGTACTTGAAAAAGCCATGA 693 42.42 REREMEGSKSEVTVFGTWYSSCCNRVLLALKLKGIPYEYVEEDLNSKSELLLRYNPVHKKVPVLVHKGKPLAESLTILEYIDECWNQAPKLLPDDPYQRSKVRFWVQFYDKKIRPATLPIIKSEGEEREKAIEEFNKLLSVFEEGTEKDFPGEFEFFCSDNLGLLEIVVGVNACNYKAFQQVIGEVIGPEKNRAFFSKVKALEKHPLMKETIPPHQQLVAKMADKYLKKP 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 34753479 34754513 + Bma012361.1 Bma14g01643 95624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01643 230 Pfam Glutathione S-transferase, N-terminal domain 11 83 IPR004045 -
Bma14g01643 230 CDD GST_N_Tau 12 85 - -
Bma14g01643 230 Gene3D - 92 229 - -
Bma14g01643 230 Gene3D Glutaredoxin 5 91 - -
Bma14g01643 230 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 8 223 - -
Bma14g01643 230 SUPERFAMILY Thioredoxin-like 12 113 IPR036249 -
Bma14g01643 230 SUPERFAMILY GST C-terminal domain-like 83 220 IPR036282 -
Bma14g01643 230 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 223 IPR045073 -
Bma14g01643 230 CDD GST_C_Tau 96 220 IPR045074 GO:0004364|GO:0006749
Bma14g01643 230 SFLD Main.3: Omega- and Tau-like 9 224 IPR045073 -
Bma14g01643 230 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 95 230 IPR010987 -
Bma14g01643 230 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 10 89 IPR004045 -
Bma14g01643 230 SFLD Glutathione Transferase (cytosolic) 9 224 IPR040079 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01643 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - qsu:112031608 290.426
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00175 Bma-Chr6:2208313 Bma14g01643 Bma-Chr14:34753479 3.44E-46 dispersed
Bma08g00281 Bma-Chr8:3817640 Bma14g01643 Bma-Chr14:34753479 3.22E-59 dispersed
Bma09g00524 Bma-Chr9:41896855 Bma14g01643 Bma-Chr14:34753479 1.87E-50 dispersed
Bma14g01643 Bma-Chr14:34753479 Bma05g01266 Bma-Chr5:52026871 1.29E-43 dispersed
Bma06g01222 Bma-Chr6:49335042 Bma14g01643 Bma-Chr14:34753479 6.83E-14 transposed
Bma14g01618 Bma-Chr14:33921496 Bma14g01643 Bma-Chr14:34753479 1.61E-161 wgd
Bma14g01643 Bma-Chr14:34753479 Bma03g00824 Bma-Chr3:7654811 1.06E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g909 . . . . . . Bma14g01643 . . Cmo18g01176 . Cma18g01154 . Car18g01063 . . . . . . . . . . Cla05g02445 Cam05g2631 Cec05g2664 Cco05g2702 Clacu05g2634 Cmu05g2488 Cre05g2601 . . . . Lsi04g00429 . . Cme10g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012942 0 1 0 2 0 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 2 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01643 Bma_Chr14 FPKM 29.045847 32.11768 14.618085 12.493085 46.085632 37.687057 49.107784 1.485771 1.442815 1.463921