Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01651 ATGCAAGCTCATAGAATTTATGGTAACAAATGGGCTTTAATAGCAAGGCTATTTCCGGGTAGAACTGACAATGCAGTGAAAAACCATTGGCATGTTATAATGGCAAGGAAATACAGAGAACAATCTAGTGCTTACAGGAGGAGGAAGATGATTCTTAGTCAGTCTGTTCACAGTAAAATGGAGGAAGATCAAAGCTATTTCAACCACAGCAATGGAGGAGGAATGAGAAATAATTTCTCTCTTTACCCTTTTGGGAGCTTCAATGGCGGAGGTTATTATGGGGTTGATTACAGCTCGAGTGGCTCAACTCAAATGGCTGTTGGAGGGGAAGCTTGTTATGGGTCTTTTGCAGAACCACATCAGACTACTTATGAGTTCTTCCCAGCAGCAGGTTCGATGATGGATCACAGGTTTCTATGGGGAAGGCTTAATCAAGAAAGACAAATTTCTGAAATGTACTCAAATTATAAACCAAATACGAGGACGATGACAGGATTTGATCAGTCAAACAATCCAAGCGGGGCTCTCACTATTCCCTCATCCGCCACACTAGTTTCGATAGCAGAGACGAGATTTGACACCCATTTAGAGAGCAGCCCACCAAAATTTATTGACTTTCTTGGGGTTGGAGCTACTTAA 639 41.94 MQAHRIYGNKWALIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRKMILSQSVHSKMEEDQSYFNHSNGGGMRNNFSLYPFGSFNGGGYYGVDYSSSGSTQMAVGGEACYGSFAEPHQTTYEFFPAAGSMMDHRFLWGRLNQERQISEMYSNYKPNTRTMTGFDQSNNPSGALTIPSSATLVSIAETRFDTHLESSPPKFIDFLGVGAT 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 35008417 35009160 - Bma012378.2 Bma14g01651 95632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01651 212 PANTHER TRANSCRIPTION FACTOR MYB105 1 212 - -
Bma14g01651 212 ProSiteProfiles Myb-like domain profile. 1 34 IPR001005 -
Bma14g01651 212 PANTHER MYB PROTEIN-RELATED 1 212 - -
Bma14g01651 212 CDD SANT 2 31 IPR001005 -
Bma14g01651 212 Pfam Myb-like DNA-binding domain 2 32 IPR001005 -
Bma14g01651 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 38 IPR017930 -
Bma14g01651 212 SUPERFAMILY Homeodomain-like 2 41 IPR009057 -
Bma14g01651 212 Gene3D - 1 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01651 K09422 MYBP; transcription factor MYB, plant - vvi:100253313 186.422
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01651 Bma-Chr14:35008417 Bma08g00113 Bma-Chr8:1407794 6.95E-20 dispersed
Bma14g01651 Bma-Chr14:35008417 Bma04g01432 Bma-Chr4:49327133 3.20E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g925 . Blo16g01113 . Bda11g01212 Bpe13g01407 . Bma14g01651 . Cmo04g01746 Cmo18g01162 . Cma18g01143 . Car18g01054 Sed14g0743 Cpe09g00186 Cpe01g01473 Bhi07g01553 Tan04g1070 Cmetu01g1022 Lac13g0327 Hepe10g1751 . . Cla05g02434 Cam05g2619 Cec05g2652 Cco05g2690 Clacu05g2621 Cmu05g2475 Cre05g2588 Cone13ag0952 Cone19ag0941 . . Lsi04g00409 Csa05g02464 Chy10g01011 Cme10g00407 . Blo11g00781 Bda07g01471 Bda11g01212 Bpe11g01645 . . . . . . Cma04g01666 . Car04g01705 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000239 3 4 3 7 4 5 8 5 5 4 5 5 8 5 5 8 5 4 9 5 5 5 4 3 5 6 5 9 5 4 158
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58409 PF00249 Myb_DNA-binding 2.10E-09 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01651 Bma_Chr14 FPKM 28.835966 31.244989 15.1049 14.714503 9.435102 8.344896 10.074974 14.028077 11.971177 13.171918