Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01662 ATGGACAAGGATTTGAGTAAGGGAGAAAAGCTTTTGAATAATCTTGGGGGCATGTTTTCTAAACCATGGAAGCCAAAGAAGACGAGAGAAATTACGGGCCCTTTAATTACGGCAGATAATAATTCATATGGGACAAGTGAAAATCATAAACAGCAGAGAGAGAAGTTGGGTGTAGCTCCACCACCAAAAGGAGGGAAATCATCATCAAGAACACCTCCTCCTGAACCATCAGGTGCTCTGCAGAAAGTCGAGGTTGAGAAGGCAAAGCAAGATGATGCACTTTCAGATTTAAGTAACATCTTGGGTGATCTCAAGAACATGGCTGTTGACATGGGAAGTGAGCTTGACAGGCAAAACAAAGCTCTCGACCATCTAGGTAACGATGTGGACGAGCTGAATTCTCGTGTGAAAGGCGCTAATCAACGAACACGGCGCTTGCTCGGGAAGTGA 450 44.67 MDKDLSKGEKLLNNLGGMFSKPWKPKKTREITGPLITADNNSYGTSENHKQQREKLGVAPPPKGGKSSSRTPPPEPSGALQKVEVEKAKQDDALSDLSNILGDLKNMAVDMGSELDRQNKALDHLGNDVDELNSRVKGANQRTRRLLGK 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 35239843 35241111 - Bma012393.1 Bma14g01662 95643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01662 149 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 84 146 IPR000727 -
Bma14g01662 149 Coils Coil 115 142 - -
Bma14g01662 149 MobiDBLite consensus disorder prediction 1 79 - -
Bma14g01662 149 SMART tSNARE_6 79 146 IPR000727 -
Bma14g01662 149 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 149 - -
Bma14g01662 149 SUPERFAMILY SNARE fusion complex 81 147 - -
Bma14g01662 149 CDD SNARE_Qc 87 145 - -
Bma14g01662 149 Gene3D - 81 148 - -
Bma14g01662 149 PANTHER SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED 1 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01662 K18211 SNAP25; synaptosomal-associated protein 25 - jre:108984872 241.121
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01662 Bma-Chr14:35239843 Bma03g00844 Bma-Chr3:8082838 1.92E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g56 . . . . . Bpe10g00897 Bma14g01662 . Cmo04g01776 . . . . . . Cpe09g00936 Cpe01g01498 . . . . . . . . . . . . . . . . . . . . Chy10g01049 . . Blo11g00791 . . . . . . . . . Cma04g01693 . Car04g01730 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005869 2 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01662 Bma_Chr14 FPKM 29.751436 32.22266 43.406147 41.970222 32.076176 28.253365 30.319231 42.839443 43.749477 44.599102