Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01676 ATGGGAAGAGGTAGGATTCAGTTGAAGAGGATAGAGAACAAGATCAATCGCCAGGTTACATTTTCCAAAAGGAGAAGTGGATTGCTTAAAAAAGCTCATGAAATCTCTGTCTTATGTGATGCTGATGTTGCTCTGATTGTTTTCTCCAACAAAGGGAAACTCTTTGAATACGCCTCCGATTCTTGCATGGAGAAAATACTTGAGCGTTATGAGAGATACTCTTATGCTGAAAGACAGCTGCTTTCATCTGAATCTGAAGCGCAGGTGAACTGGAATTTTGAGTATTCCAGACTGAAAGCAAAGATCGAGCTCCTCCAGAAAAACCACAGGCAATATCTTGGAGAAGATTTGGAGTCTTTGGGTCTCAGAGGTCTTCAAAATTTAGAGCATGATCTAGATACTGCTCTTAAACAAATTCGAACAAGAATAAACCAGCTAATGCATGAATCGATTTCTGCTCTTCAGAAGAAGGAGAAGTTCATACTGGAGCAAAACACCTTCCTAACAAAGCAGATTAAGGAGAAGGAGAAGAGTTTAGCACTGCAGGGTTCTGAGTGGAACCTCCAAAACATTGGCTCTAATGGCTCTTCTTTCTCACTGCCAAACCCTCTTCCCTCTATAAACATTTGTGAGAATAACCCACAAGAAGATGCACAAGGAATGGCAAGGAATGAGCTTGATCTCACTCTGGAACCAGTTTACCAGTTCCACCTTGGATGCTTTGCTGCCTAA 732 41.53 MGRGRIQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSNKGKLFEYASDSCMEKILERYERYSYAERQLLSSESEAQVNWNFEYSRLKAKIELLQKNHRQYLGEDLESLGLRGLQNLEHDLDTALKQIRTRINQLMHESISALQKKEKFILEQNTFLTKQIKEKEKSLALQGSEWNLQNIGSNGSSFSLPNPLPSINICENNPQEDAQGMARNELDLTLEPVYQFHLGCFAA 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 35661221 35673397 - Bma012416.1 Bma14g01676 95657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01676 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma14g01676 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma14g01676 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma14g01676 243 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Bma14g01676 243 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Bma14g01676 243 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma14g01676 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma14g01676 243 Coils Coil 95 115 - -
Bma14g01676 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma14g01676 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Bma14g01676 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma14g01676 243 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 228 - -
Bma14g01676 243 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma14g01676 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma14g01676 243 Coils Coil 125 145 - -
Bma14g01676 243 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00742 Bma-Chr6:38543749 Bma14g01676 Bma-Chr14:35661221 4.58E-76 dispersed
Bma14g01676 Bma-Chr14:35661221 Bma14g01715 Bma-Chr14:36348830 7.89E-132 dispersed
Bma13g00588 Bma-Chr13:13529978 Bma14g01676 Bma-Chr14:35661221 1.09E-25 transposed
Bma02g00105 Bma-Chr2:951013 Bma14g01676 Bma-Chr14:35661221 1.82E-43 transposed
Bma01g00131 Bma-Chr1:1275757 Bma14g01676 Bma-Chr14:35661221 1.18E-75 wgd
Bma14g01676 Bma-Chr14:35661221 Bma15g00109 Bma-Chr15:1166027 3.38E-57 wgd
Bma14g01676 Bma-Chr14:35661221 Bma03g00861 Bma-Chr3:8310992 4.44E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58411 PF01486 K-box 2.40E-24 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01676 K09264 - qsu:112022353 344.354