Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01683 ATGGCTCTAGATAACGCTGGCAATGAATCACATCAGAAGCGGCATGGTCTTTTAAAAGATTTAGTGCGAATCTTTAAGAAAAAGAATTCTAATCGTCATGAGATAGTTCCCATTCTCGAACCTTTATCATTTGACAAAGGGTTCTTTGTAGTTATCCGAGCATGCCAACTCCTAGCTCAAAAGAATGATGGAATCATATTGGTAGGCGTGGCAGGTCCTTCTGGGGCAGGGAAGACTGTGTTTACAGAAAAGATTCTGAACTTCATGCCCAGCATTGCAGTCATCTCAATGGATAATTACAACGATTCAAGTCGTGTTGTTGATGGGAATTTCGATGATCCACGTCTGACTGATTACGATACTTTGCTTGAAAATCTCAGAGATTTAAAAGAAGAGAAGCAAGTTGAGGTTCCCATTTATGATTTCAAATCTAGCTCTCAAGTGGGATACAGAACACTTGAGGTTCCAAGCTCTCGTATCGTGATTATTGAGGGCATATATGCTCTGAGTGAAAGGTTAAGACCTCTGTTAGACCTTCGAATATCTGTCACTGGTGGAGTTCACTTTGATCTTGTAAAAAGGGTTTTGCGTGACATACAACGTGCCGGCCAGGAACCCGAAGAGATAATCTATCAAATATCTGAAACGGTTTATCCAATGTACAAGGCTTTTATAGAACCAGATCTTCAAACTGCACACATAAAAATCATGAACAAGTTTAATCCATTTACAGGATTTCAAAGTCCTACTTACATCCTAAAGTCAGCGAGGAATGTAACGGTAGATCAAATTAAAGCTGTTTTTTCTGAAGATTATGTAGAGAGTAAGGAGGAGACCTATGATATCTTTCTATTACCCCCAGGCGAAGATCCAGAGTCTTGTCAATCATATCTACGGATGCGGAATAAAGATGGAAAGTACAGTCTTATGTTTGAGGAATGGGTGACCGATAATCCATTTGTCATATCACCAAGAATAACTTTTGAAGTCAGTGTGCGTCTTCTTGGCGGGCTAATGGCCTTAGGTTACACAATAGCAACAATCCTTAAAAGAAGTAGTCATGTATTCTCTGATGATAGAGTGTGCGTGAAAATTGATTGGCTTGAGCAACTTAAACGTCAATATATTCAGGTCCAAGGAAAAGATCGTATGGTTGTAAAATTTGTGGCAGAGCAGCTGGGATTGGATGGCTCTTACACTCCTCGCACCTATATTGAGCAAATTCAATTAGAAAAGCTTATAAACGAAGTCATGGCTTTGCCAGATGATTTAAGAACGAAGCTTAGCCTGGATGAAGATCTTTGTTTGAGTCCTAGAGAGGCACTCTCCAAAGCGTCAGCTGATAGAGTTGCCTCAAGAAATAAGCATCAGAAGAGTGGTTTGTCTCAGTCCTATACAATGCAAAGGGATAAAACTTTCTCAAAGTTTACTGCTGCCAACTATGAAAAATTTGATAGGAGAAATAATGAGTCTTCGACGGTGGTTGTAAATGAGGGAATCATCACCCAGCTTTCTGAGCAGATTTCATCATTAAATGATCGAATGGATGTGTTTACCACTTGCATTGAGGAGCTGAATTCCAAGTTAGACATGAAGAAAAGTTCCCCCGGTCAACAGAACTCAGCTCTTCAAGCTGAGTTATGCAATGGCTCTGCCCCAAATTCTTATCGTTTCTATAATGGCTCGTTTGCTGGATCTGTCATGCCAAATTCTTCATCGTCTTCCCACTTGGCTAAGGAGTCGTCTCCTTTAATGGAAGAGATATCAGTTATAGCGCGAGGACAACGACAACTGATGCATCAATTAGATAGCCTTAGCAAACTTATGCGAGAGAACTTGGTAGAGCCACGTCTTCAAGTAAGACCGAAGAGGAAAAACATAGTTGCTTATTCCGAGCGATACACCATTCCGGTCATTTTGACAACCGTAGCCGTGGGCAGCATTGGTACGTTCTTGGTTTACAAGTCTCGAGCCCGAAACTAA 1983 40.8 MALDNAGNESHQKRHGLLKDLVRIFKKKNSNRHEIVPILEPLSFDKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKILNFMPSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLENLRDLKEEKQVEVPIYDFKSSSQVGYRTLEVPSSRIVIIEGIYALSERLRPLLDLRISVTGGVHFDLVKRVLRDIQRAGQEPEEIIYQISETVYPMYKAFIEPDLQTAHIKIMNKFNPFTGFQSPTYILKSARNVTVDQIKAVFSEDYVESKEETYDIFLLPPGEDPESCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFSDDRVCVKIDWLEQLKRQYIQVQGKDRMVVKFVAEQLGLDGSYTPRTYIEQIQLEKLINEVMALPDDLRTKLSLDEDLCLSPREALSKASADRVASRNKHQKSGLSQSYTMQRDKTFSKFTAANYEKFDRRNNESSTVVVNEGIITQLSEQISSLNDRMDVFTTCIEELNSKLDMKKSSPGQQNSALQAELCNGSAPNSYRFYNGSFAGSVMPNSSSSSHLAKESSPLMEEISVIARGQRQLMHQLDSLSKLMRENLVEPRLQVRPKRKNIVAYSERYTIPVILTTVAVGSIGTFLVYKSRARN 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 35804274 35809340 + Bma012426.2 Bma14g01683 95664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01683 660 CDD UMPK_like 67 239 - -
Bma14g01683 660 Coils Coil 116 136 - -
Bma14g01683 660 Gene3D - 66 247 IPR027417 -
Bma14g01683 660 Pfam CYTH domain 269 404 IPR023577 -
Bma14g01683 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 236 IPR027417 -
Bma14g01683 660 PRINTS Uridine kinase signature 132 147 - -
Bma14g01683 660 PRINTS Uridine kinase signature 224 237 - -
Bma14g01683 660 PRINTS Uridine kinase signature 65 82 - -
Bma14g01683 660 PRINTS Uridine kinase signature 188 198 - -
Bma14g01683 660 ProSiteProfiles CYTH domain profile. 248 410 IPR023577 -
Bma14g01683 660 PANTHER INORGANIC PYROPHOSPHATASE TTM2 6 645 - -
Bma14g01683 660 SUPERFAMILY CYTH-like phosphatases 262 407 IPR033469 -
Bma14g01683 660 PANTHER URIDINE KINASE 6 645 - -
Bma14g01683 660 Pfam Phosphoribulokinase / Uridine kinase family 68 236 IPR006083 GO:0005524|GO:0016301
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01683 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - tcc:18610124 994.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g00666 Bma-Chr14:7224403 Bma14g01683 Bma-Chr14:35804274 5.63E-14 dispersed
Bma14g01683 Bma-Chr14:35804274 Bma15g00104 Bma-Chr15:1115056 4.53E-175 dispersed
Bma15g00031 Bma-Chr15:333211 Bma14g01683 Bma-Chr14:35804274 5.53E-48 transposed
Bma14g01683 Bma-Chr14:35804274 Bma03g00874 Bma-Chr3:8511551 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1031 . . . . . . Bma14g01683 . . . . . . . . . . Bhi07g00113 . . Lac13g1620 Hepe01g0410 . . . . . . . . . . . . . . . Chy10g00122 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01026 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001604 2 5 3 2 2 1 4 1 1 1 1 1 4 2 2 4 1 3 4 1 2 2 3 2 2 2 2 5 4 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01683 Bma_Chr14 FPKM 28.12542 30.908823 25.319622 25.695953 28.841726 29.469217 29.861704 24.305616 21.870239 25.54217