Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01686 ATGGTTATATACAATTTTGGAAGCTCAACTGTGTATTCTATGTGGAGTAGAGGGCATTTTCCCCTCTCGTTGAATGACTGTTCCTACTTATTGAATGAGAGGTTTTCTAAATACCCAGTTCAGGTTTCTTCAAAATCATGCTGTTATTGTTGTTGTTCTTGTCGTGAATTTCCCTGTAATAGAGTGTCTAATTTCCCTAGTTTTTTATATGGGTTAAGGCAGTCCAATTTGATTCAATGGTCAGCTTCTAGGAGACTGATCTTGGGTGGTCTGGAAAGGAACTTTTCTCGGCTTCCGCATTATGAGATTGACAGAGTCTGTTATAAAGTCCCTCATTCTGCTAACCAGAGGAGGGTATGTAATAGAAGTGGGAGAAGAAGAAGTTTAGAATGTTGCTGTGTGCATTCTGAAGAGAGTACCGAATTTGATTATGAGGATGATGCAGGGGCGTTGCTTAGATTGTTGAGTGATGAGGAGGAGAGAGATGAATATTGTGATTGTCGTGAGAGAAGAAGAACATCGTATGAGAGGGTGAACGGGGAGAAGAAACGAAATTATGGGAAGAGAGAAATGGAAATCATGTCATCTAGAAGTGTACTGATGGAGAAGAGGCTGAGAAATAGTGGTGGTAGGAAAAAATTAAGCTCACCAGAAAGCAAAACCGTCGATAAGAAAAGGGACGTTTGCTGTAAATGCAACGGAGGTGAGACAGGAAATGGAGGTTCTGATTTCTTAGAGACAAAATCAAATAATGGAGGCAAGAAAGTAAAAATTGAGCCCAGAAAAGAAAACTATAGAGTGGACAAAGGCATTTCAACTCATTCTAGAGGTGAAATTTACAGAAGAAGGAAAGGTGGTTCTAATAATTCATATTATTACTCATTCCCTTCATCAGACACTTCAGAGAATGATACTGAAATCATAGACAAGCATAGTCTAATCTCGGAAGAACTTACAAATAAGGATAGAAGTCAGGAAAAGTTATCAAAAAGAAAATTGAAAGAGGAGATTGAGATGCGGAATTCGAGGGCTTCTCAGCAAGAAAATTCTTTATTGGAAAGTGCCGTTAAATTAGATTCGAGGAAGAAACATGTGAAGAAAATTTCTCAAGTATCATCAATTGAAGAAACAAAGTCTGCGGCAGATTCATCCCAGATGCAGTCAAGAGTGTCAATGACCACCGATGAAGGGGCTTCAAGCTCACAGAAAAATTTCAATTATGGGAAAGATTATTCTACCTCCCCCATGAGTTTGGATGGGAGAACAGAAACGCAGAATGAGATAATGAGAAACCAAACTATGGATTTGTCTTCTTCTGGGCAAAAGTATGACGAATTTACAGAAGCTTCAGGAATCAGTTCCAGCAATTTTGGAAAAAGTTCTTGGTCTGCAAATAGTTTTAGTGCACAAAGAAACGAAGCTGCCAATTTTGATCAGAAAGCTAGGAACAGACATCACAAAATTTATGGCGTTGTCTCTGAAGAAACTAATTTAAGACAAGAGTCTAAATCTCAGAAACAGGGTAGAATTGTGAAATTTCAAGAATATGATACAGAAGGTAACTTTAATCAGCAGAGGAAGTCTAATACTGAAGTGAGTGCAAAAGAGAGTACAATTTCGGATAAGGCTTCAGCTCAGGAAACAAACGAGCGACTCAACCAAACAAAAATTTATGTTACTGGAAAGACTGTCTCTCGACAGACATCCCAAAATGTAACTGAAACATCGGTTACCAACAACAGTAATTCTGACAGTGCTACGATTTGTGGGTTTGAAACTATAATAAAGAGCGAGGAACATGAACCTGTTTTGGTTTCTACGTCACATCAGGGAAGAAAAAATCTACAGTCTGAGACAGATAAAAGAGGTTCTCTAAAACTCCAATCTGGAAGTGTTTCCCAAGAGGTCGACATTTCTAAAAACATAATTAGAACTTCGGAAGAAACTTTCAGAGAGAAAATTGATCATGAAGAAAGAAAGATACGACTACAGAAAAGGCCAGTTATACTAACAAGGAAAGAGCATAATCAAACTGGTAGTGTGACCTTGCAAATTGAACCAGGAAAAGAGGCAAGTCCTGATGGAGAATCGAGCTTTCAAGCATCTTTGAGGAGTCCACAAACTAGGACTAATGTGATTGATAAGGAGGAATCGAACAGATTTTCAGAGGAAATATTAATTCCTCCCTCATCTCAATTAGTCAGTAGGGATGACTTTCGTGCTGAGTTGACAAGTGGAACTATGGCTCAAAAAGTTTCTGGCCGTGCGTCAGAAAGTGGATCTAGTTTTAAAGATAAATCCCATGCGTCACATTATAAATCCTATAGTGATAGTGGGAGTGGTAAGAGTTACTGGGAGCCTTTATTCATATCCCCGACCGAGGATGCACTAGGCTCAGCTACTCGTTTTGAGCAGTCATCGGCACAGTTTGTTGGGGAGTTCATCAAGCAGGCAAGGGCTGAAGTCTCAACTTCAGAAATCCAGAAGGAAGAAATGGTGTATGGAACGAATCTGATGTATGAAGGGGAGAAAGAAATCCAAAGGAGTTCAAGTCGTTACGGTTCGGTAGACGTTGAAATGAAGGATCGTGACTCACGAGGATCATCTCAGGGTTCTGGAACGAAGGGTCCTGATGATGACATGGGACGTGTTACTGAACCAGCTGTTGAGAAGTCTTCCAAGGTAGAAGAACTGAAGGGCAGCTCAGAAACTGAAAATGCCATTGTGAAGAGAAGTGGTAGGTCTTTGTGGAATATTATTGGGAATATAGTTCGGCTAAGATGGGTTTTACGTGCTGAAACCTCCAAAACATCTAAAAAATCTGGTGGAAAATCTTCTTCCAGTGAATCAAACAGTAATGAAACTTGGTTCTCTGGCCGCGAGCCTGAAGAAAACATTGACAACGATACAGAAACAGGCAGAATTATGCTACCAGAATCCACATCTTCAGAACGGTTGGAAATTGAGAAAAGTTCTACTCAAATTGAAGAGGCTTCAAATAAAACTGAATCAGAGAATGTTAAGTATCATGACGCAGATCCATCATCTCCTCCGAGTATTAAGGGAAGTGGGTCAACATCAGGAGGGAACTTGTTGGTTTCTGAAGAGGAAGTTTCAGGTTCAAGAGAAGATGGAAATAGACTTCCAGTTGTTTCGATGGGTGCAGGGATTACACTGTCATCATTACCTTTACCTACTGAGAGCAAAAGTAAATACCCCATTGCCGAAAACATTTCACTTGGTGGAACTGATGCCTCTGGTAGTAGCTTAGTGGAGCCCTTGAAGTTGGAGTTATCAAAGCCAGAGGTAAAAGGGGGAGAATTGAAACTGAGGAAGTTCCAAAGAACAGCGCAAGTCTCGAGAGATAAGTTTGATGAATGGGAAGAAGCATATTTAGTTGAGAACGAGCAGCGGAAAATGGACGAAATGTTTATGAGAGAAGCACTTGCTGAAGCGAAAAAGGCTGCTGATTTGTGGGAGGTGCCTGTCGGAGCTGTACTCGTGCGGCATGGAAAAATTATTGCTAGGGGATTCAATCTGGTGGAGGAGTTGAGGGATTCCACTGCCCATGCTGAAATAATCTGTATTAGAGAAGCTTCAAATTTACTCAAATCGTGGAGGCTTGCGGAGACTACTCTGTATGTGACACTTGAGCCATGTCCCATGTGTGCGGGAGCGATATTGCAAGCACGTGTCGACACCCTTGTTTGGGGAGCACCAAATAAGCTTCTTGGAGCTGATGGCAGCTGGATTAGGCTTTTTCCCGACGGAGGAGAAGGAAATGGATCGCAAACGGCAGACAAACCAGCTGCTCCTGTCCATCCATTCCACCCAAATATGAGAGTTCGTCGAGGGGTACTATCGGCAGATTGTGCAGATGCGATGCAGCAATTTTTCCAGCGGAGGAGGAGAAAGAAGGAGAAAGAAGAGGGCTCTCCCCCAGCCACCCCCTCATGTCTCCCAGTTACACCCTCTTCAGCCAAACTCATGAACAAAATGCATGATCTTTTCCATATGATGTTCTGTTTGTGA 4032 41.42 MVIYNFGSSTVYSMWSRGHFPLSLNDCSYLLNERFSKYPVQVSSKSCCYCCCSCREFPCNRVSNFPSFLYGLRQSNLIQWSASRRLILGGLERNFSRLPHYEIDRVCYKVPHSANQRRVCNRSGRRRSLECCCVHSEESTEFDYEDDAGALLRLLSDEEERDEYCDCRERRRTSYERVNGEKKRNYGKREMEIMSSRSVLMEKRLRNSGGRKKLSSPESKTVDKKRDVCCKCNGGETGNGGSDFLETKSNNGGKKVKIEPRKENYRVDKGISTHSRGEIYRRRKGGSNNSYYYSFPSSDTSENDTEIIDKHSLISEELTNKDRSQEKLSKRKLKEEIEMRNSRASQQENSLLESAVKLDSRKKHVKKISQVSSIEETKSAADSSQMQSRVSMTTDEGASSSQKNFNYGKDYSTSPMSLDGRTETQNEIMRNQTMDLSSSGQKYDEFTEASGISSSNFGKSSWSANSFSAQRNEAANFDQKARNRHHKIYGVVSEETNLRQESKSQKQGRIVKFQEYDTEGNFNQQRKSNTEVSAKESTISDKASAQETNERLNQTKIYVTGKTVSRQTSQNVTETSVTNNSNSDSATICGFETIIKSEEHEPVLVSTSHQGRKNLQSETDKRGSLKLQSGSVSQEVDISKNIIRTSEETFREKIDHEERKIRLQKRPVILTRKEHNQTGSVTLQIEPGKEASPDGESSFQASLRSPQTRTNVIDKEESNRFSEEILIPPSSQLVSRDDFRAELTSGTMAQKVSGRASESGSSFKDKSHASHYKSYSDSGSGKSYWEPLFISPTEDALGSATRFEQSSAQFVGEFIKQARAEVSTSEIQKEEMVYGTNLMYEGEKEIQRSSSRYGSVDVEMKDRDSRGSSQGSGTKGPDDDMGRVTEPAVEKSSKVEELKGSSETENAIVKRSGRSLWNIIGNIVRLRWVLRAETSKTSKKSGGKSSSSESNSNETWFSGREPEENIDNDTETGRIMLPESTSSERLEIEKSSTQIEEASNKTESENVKYHDADPSSPPSIKGSGSTSGGNLLVSEEEVSGSREDGNRLPVVSMGAGITLSSLPLPTESKSKYPIAENISLGGTDASGSSLVEPLKLELSKPEVKGGELKLRKFQRTAQVSRDKFDEWEEAYLVENEQRKMDEMFMREALAEAKKAADLWEVPVGAVLVRHGKIIARGFNLVEELRDSTAHAEIICIREASNLLKSWRLAETTLYVTLEPCPMCAGAILQARVDTLVWGAPNKLLGADGSWIRLFPDGGEGNGSQTADKPAAPVHPFHPNMRVRRGVLSADCADAMQQFFQRRRRKKEKEEGSPPATPSCLPVTPSSAKLMNKMHDLFHMMFCL 1343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 35911300 35917763 + Bma012430.1 Bma14g01686 95667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01686 1343 MobiDBLite consensus disorder prediction 849 868 - -
Bma14g01686 1343 MobiDBLite consensus disorder prediction 983 1010 - -
Bma14g01686 1343 MobiDBLite consensus disorder prediction 372 417 - -
Bma14g01686 1343 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 891 1333 - -
Bma14g01686 1343 Coils Coil 330 350 - -
Bma14g01686 1343 Hamap tRNA-specific adenosine deaminase [tadA]. 1145 1303 IPR028883 GO:0002100|GO:0008251
Bma14g01686 1343 MobiDBLite consensus disorder prediction 1018 1034 - -
Bma14g01686 1343 CDD nucleoside_deaminase 1157 1252 - -
Bma14g01686 1343 MobiDBLite consensus disorder prediction 362 417 - -
Bma14g01686 1343 MobiDBLite consensus disorder prediction 318 350 - -
Bma14g01686 1343 SUPERFAMILY Cytidine deaminase-like 1125 1305 IPR016193 GO:0003824
Bma14g01686 1343 MobiDBLite consensus disorder prediction 939 959 - -
Bma14g01686 1343 MobiDBLite consensus disorder prediction 879 904 - -
Bma14g01686 1343 PANTHER TRNA(ADENINE(34)) DEAMINASE, CHLOROPLASTIC 891 1333 - -
Bma14g01686 1343 MobiDBLite consensus disorder prediction 934 1049 - -
Bma14g01686 1343 MobiDBLite consensus disorder prediction 849 905 - -
Bma14g01686 1343 MobiDBLite consensus disorder prediction 318 342 - -
Bma14g01686 1343 MobiDBLite consensus disorder prediction 745 781 - -
Bma14g01686 1343 Gene3D Cytidine Deaminase, domain 2 1128 1313 - -
Bma14g01686 1343 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 1139 1261 IPR002125 -
Bma14g01686 1343 Pfam MafB19-like deaminase 1141 1241 IPR028883 GO:0002100|GO:0008251
Bma14g01686 1343 MobiDBLite consensus disorder prediction 1300 1323 - -
Bma14g01686 1343 MobiDBLite consensus disorder prediction 686 707 - -
Bma14g01686 1343 MobiDBLite consensus disorder prediction 524 548 - -
Bma14g01686 1343 MobiDBLite consensus disorder prediction 746 760 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01686 K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] - csv:101215576 773.852
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00563 Bma-Chr1:4987571 Bma14g01686 Bma-Chr14:35911300 4.70E-15 dispersed
Bma09g00480 Bma-Chr9:39967433 Bma14g01686 Bma-Chr14:35911300 1.67E-08 dispersed
Bma14g01686 Bma-Chr14:35911300 Bma05g00331 Bma-Chr5:10381756 6.33E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010359 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01686 Bma_Chr14 FPKM 0.0 0.659292 0.503945 0.760398 55.376335 60.370655 55.882416 0.0 0.0 0.0