Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01693 AAGGATTTACAGGTTAAATCGTCACCACCTGTTCAACCTATTTCGATAAATAATGATCCTGCTATTATCCAGTCACATTATCCACCACCTGTTTCCACAATAACCAGCTTGCCTTCTGCTGTTAGTGGGTCTTCTCCTGATGTAAGTTCCCATTATCCAGGAAGTGGATTGCCATTATATCAGCCTGGAGGGACTTTAGGGTCATGGGGAGCTTCTCCTTCCCCGCAAAATATAAATGGTGCTGGGGTTGCTATGCCAATGTATTGGCAAGGATATTATGGGCCCCCAAATGGGCTTCCTCATTTACCCCAACAATCATTACTTAGACCTCCACCCGGGCTGCCTATGCCTCCCCTTCAGCATCCAATGCCTCCCCCTCACCAGCAGCCACCAATTCAGTATCCCAGTTTTAATCTATCTTTACCTCAACCCACAGGAGCATCAAAATTACCAGAATTACCATCTTCTTTCCTTTCTGCCAGCACTTCTAGTTCTCTAACCTTTTCCTCCACTTCAACTTTGCCAGCAGCTCTGCCTTCTGCCCTGTCTGCTCCACAATCATCTGAAATGCTACCTCTGGTTAACAAGGCAACAAATTTGTCCCTTCCTCCAGGATCACTAAGTACTAATTTTTCACCACTTTCTTCATTGGCAATTTCAAGTACAGAAGGCGTTGCTGTGGTGCCACCAATAATTAATAAACCCATACCTGGTCCAGCTCTGCCATATCAAACTGGACCATCATCCATATCTTCTATTGGTGTGAGTTTAAATTCAAAGCACTCACAAACGTCAACACCATCTCTAGTTACCCCTGGCCAGCTTTTACAATCTGGTGCAACTGAGGTGTCCTCATCACGAACTATTCAGACAGCTCACAAAGATGTGGAAGTGATTCAAGTTTCTTCATCAGAGCTATCCGCTCCTGTTTCGGCTGATGCCCAACCACCAATATTGCCATTGCCTATACCATCAAGAAATGTTCAGAAGCCAAATAATGCTTCTTTTCAAGCTCGCCATGTTTATCGGGGACGTGAACGTGGAAGAGGGACTGGGAGTTCGCGCCACATTACCAAATTCACAGAAGATTTTGATTTTACTGCAATGAATGAGAAATTTAATAAGGATGAAGTATGGGGTCATCTTGGCAAGGGCAATAAATCTAGTCCAACGGACGAATACAGAGATGGAAGACTTAGTGATGAAGACCATAGTCTAGATGATGATGATGGTCAGTTACCAAAGGTTGAAGTCAAGCCTCTGTATAATAAGGATGACTTCTTTGATTCTCTCTCCTGCAATGCACTCGAAAATGGAGCCCATAATGGAAGGGTGAGATACATGGACCAAATCAAAATGGACACCGAGCTGTTCAACTTGATTGTTTTCCTATGGATGCAGACTTTTGGTGATTTTCCGAGGCACCAAGGTGGTCGAGGTTTTGTGCGTGGGGGACGTTCTCGTGGACAATATGGAAGAGGTTACGGCTACGGCGGAAGGGGTCGGGGCCGGTATACTCCCCATGGTGCGCCATATAGAACAGGCCAGTAG 1551 45.26 KDLQVKSSPPVQPISINNDPAIIQSHYPPPVSTITSLPSAVSGSSPDVSSHYPGSGLPLYQPGGTLGSWGASPSPQNINGAGVAMPMYWQGYYGPPNGLPHLPQQSLLRPPPGLPMPPLQHPMPPPHQQPPIQYPSFNLSLPQPTGASKLPELPSSFLSASTSSSLTFSSTSTLPAALPSALSAPQSSEMLPLVNKATNLSLPPGSLSTNFSPLSSLAISSTEGVAVVPPIINKPIPGPALPYQTGPSSISSIGVSLNSKHSQTSTPSLVTPGQLLQSGATEVSSSRTIQTAHKDVEVIQVSSSELSAPVSADAQPPILPLPIPSRNVQKPNNASFQARHVYRGRERGRGTGSSRHITKFTEDFDFTAMNEKFNKDEVWGHLGKGNKSSPTDEYRDGRLSDEDHSLDDDDGQLPKVEVKPLYNKDDFFDSLSCNALENGAHNGRVRYMDQIKMDTELFNLIVFLWMQTFGDFPRHQGGRGFVRGGRSRGQYGRGYGYGGRGRGRYTPHGAPYRTGQ 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 36080015 36083162 + Bma012441.1 Bma14g01693 95674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01693 516 Pfam FDF domain 359 445 IPR019050 -
Bma14g01693 516 MobiDBLite consensus disorder prediction 379 413 - -
Bma14g01693 516 ProSiteProfiles DFDF domain profile. 352 388 IPR025762 -
Bma14g01693 516 MobiDBLite consensus disorder prediction 100 148 - -
Bma14g01693 516 MobiDBLite consensus disorder prediction 34 51 - -
Bma14g01693 516 SMART FDF_2 358 462 IPR019050 -
Bma14g01693 516 MobiDBLite consensus disorder prediction 105 132 - -
Bma14g01693 516 MobiDBLite consensus disorder prediction 8 22 - -
Bma14g01693 516 MobiDBLite consensus disorder prediction 133 148 - -
Bma14g01693 516 MobiDBLite consensus disorder prediction 34 54 - -
Bma14g01693 516 ProSiteProfiles FFD box profile. 420 435 IPR025761 -
Bma14g01693 516 MobiDBLite consensus disorder prediction 1 22 - -
Bma14g01693 516 PANTHER SCD6 PROTEIN-RELATED 1 508 - -
Bma14g01693 516 PANTHER LSM DOMAIN, FDF DOMAIN, FFD BOX, DFDF DOMAIN, TFG BOX-RELATED 1 508 - -
Bma14g01693 516 MobiDBLite consensus disorder prediction 492 516 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01693 K18749 LSM14, RAP55, SCD6; protein LSM14 - vvi:100242198 476.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01693 Bma-Chr14:36080015 Bma15g00094 Bma-Chr15:1022538 2.09E-160 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g247 Blo01g00476 . . . . . Bma14g01693 . Cmo04g01615 Cmo18g01071 . . Car04g01593 . Sed06g1855 Cpe09g00267 Cpe01g01755 Bhi07g01381 Tan04g0909 Cmetu10g0348 Lac13g0448 Hepe10g1862 . . Cla05g02337 Cam05g2511 Cec05g2535 Cco05g2578 Clacu05g2505 Cmu05g2367 Cre05g2484 Cone13ag0863 Cone19ag0863 . . Lsi04g00298 Csa05g02074 . Cme10g00301 . Blo11g00828 . . Bpe11g01686 . . . . . . Cma04g01995 . . Car15g01281 Cpe13g00029 . Bhi12g00822 . . . . . Lcy10g0875 Cla01g00562 Cam01g0585 Cec01g0577 Cco01g0601 Clacu01g0580 Cmu01g0551 Cre09g1956 Lsi09g00611 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001922 1 2 3 2 2 2 4 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 1 2 3 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01693 Bma_Chr14 FPKM 11.960263 13.020047 1.268909 0.973921 15.710707 14.171822 16.488649 1.493886 1.20434 1.359063