Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01707 ATGAAGATTTTTGTGAAGACTCTTAAAGGAACACACTTCGAAATTGAAGTTCTGCCCGAGGATACGGTTTCTGATGTCAAGAAAAACATTGAAGCTGTTCAGGGTGTTGATGTTTATCCGGCTGCACAAACCATGCTAATTCATCAGGGAAAGGTCCTCAAAGATGGATCCACTCTGGATGAAAATAAAGTTGCTGAAAATAGTTTTATTGTGGTTATGCTAACAAAGAATAAGAGCTCAGCTGGTGAGGCTTCAACCAATAGACCTGCAACTGCTGCAACAAAGGTTCCAGAGACGAGTGCAGTGCCTCCTGCCACAACTCCTGTGGTCACTGCACAACCTACTCCTGAAGTACTCCCAGCTCCCTCTGCACCTGCTCCTTCTCCTGCGGTTGCTGCTGTCTCAGATGCTGACATGTATGGCCAAGCAGCATCTAATCTGGTTGCTGGCAATATCTTAGAGCAGACTGTACAACAAATTTTGGATATGGGTGGAGGAACCTGGGATAGAGATACCGTTGTCCGAGCTCTGCGAGCTGCTTACAATAATCCAGAGAGAGCCGTTGAATATCTATATTCTGGTATACCGGAGCAAGCTGAAGTTCCACCTGTGGCTAGAGTTCCTCCTGGTCCAGCAGCAACTCCTCAAACGCAGCCTCCTCAGCCTGTTCTACCAGACACTGTTCCATCAAGTGGTCCAAATGCTAATCCTTTAGACCTCTTTCCCCAGGGTCTTCCAAGTGTAGGTTCGGGTGCTGCTGGTGCAGGGACACTTGATTTCTTACGCAACAGCCAGCAGTTTCAAGCTTTGAGGGCAATGGTGCAGGCTAACCCACAGATTCTGCAGCCCATGCTTCAAGAGCTAGGTAAACAAAATCCAGTTCTTATGAGGCTAATTCAAGAGCATCAAGCTGACTTTGTCCGGCTTATCAATGAGCCTGTTGAAGGAGGAGAGGGAAATATACTCGGGCAGCTGGCAGCAGCAATGCCACAGGCTGTAACTGTAACCCCTGAAGAGCGAGAAGCCATTCAACGGCTTGAAGCGATGGGGTTTGACAGAGCAATTGTTTTGGAAGTTTTCTTTGCATGCAACAAGAACGAGGAGCTGGCTGCGAACTATCTTCTAGATCACATCCATGAATTCGAGGATTGA 1152 47.48 MKIFVKTLKGTHFEIEVLPEDTVSDVKKNIEAVQGVDVYPAAQTMLIHQGKVLKDGSTLDENKVAENSFIVVMLTKNKSSAGEASTNRPATAATKVPETSAVPPATTPVVTAQPTPEVLPAPSAPAPSPAVAAVSDADMYGQAASNLVAGNILEQTVQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVARVPPGPAATPQTQPPQPVLPDTVPSSGPNANPLDLFPQGLPSVGSGAAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPVLMRLIQEHQADFVRLINEPVEGGEGNILGQLAAAMPQAVTVTPEEREAIQRLEAMGFDRAIVLEVFFACNKNEELAANYLLDHIHEFED 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 36193700 36200275 - Bma012454.1 Bma14g01707 95688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01707 383 CDD UBA1_Rad23_plant 147 196 - -
Bma14g01707 383 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 336 377 IPR015940 -
Bma14g01707 383 MobiDBLite consensus disorder prediction 80 113 - -
Bma14g01707 383 Pfam XPC-binding domain 258 313 IPR015360 GO:0003684|GO:0006289|GO:0043161
Bma14g01707 383 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 151 194 IPR015940 -
Bma14g01707 383 Gene3D - 331 378 - -
Bma14g01707 383 PANTHER EXCISION REPAIR PROTEIN RAD23, PUTATIVE-RELATED 1 382 - -
Bma14g01707 383 SUPERFAMILY UBA-like 151 203 IPR009060 GO:0005515
Bma14g01707 383 SMART CBM 256 299 IPR006636 -
Bma14g01707 383 SUPERFAMILY UBA-like 320 381 IPR009060 GO:0005515
Bma14g01707 383 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 382 - -
Bma14g01707 383 PRINTS DNA repair protein Rad23 signature 284 306 IPR004806 GO:0006289
Bma14g01707 383 PRINTS DNA repair protein Rad23 signature 333 349 IPR004806 GO:0006289
Bma14g01707 383 PRINTS DNA repair protein Rad23 signature 365 380 IPR004806 GO:0006289
Bma14g01707 383 PRINTS DNA repair protein Rad23 signature 350 364 IPR004806 GO:0006289
Bma14g01707 383 CDD UBA2_RAD23_plant 335 377 - -
Bma14g01707 383 MobiDBLite consensus disorder prediction 204 227 - -
Bma14g01707 383 SMART ubq_7 1 75 IPR000626 GO:0005515
Bma14g01707 383 Pfam UBA/TS-N domain 339 374 IPR015940 -
Bma14g01707 383 Pfam UBA/TS-N domain 153 191 IPR015940 -
Bma14g01707 383 Gene3D - 249 314 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bma14g01707 383 Gene3D - 146 196 - -
Bma14g01707 383 MobiDBLite consensus disorder prediction 204 231 - -
Bma14g01707 383 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Bma14g01707 383 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Bma14g01707 383 TIGRFAM rad23: UV excision repair protein Rad23 1 382 IPR004806 GO:0006289
Bma14g01707 383 SMART uba_6 153 193 IPR015940 -
Bma14g01707 383 SMART uba_6 339 376 IPR015940 -
Bma14g01707 383 Gene3D - 1 80 - -
Bma14g01707 383 MobiDBLite consensus disorder prediction 80 124 - -
Bma14g01707 383 CDD Ubl_Rad23 1 74 - -
Bma14g01707 383 SUPERFAMILY Ubiquitin-like 1 78 IPR029071 -
Bma14g01707 383 SUPERFAMILY XPC-binding domain 254 320 IPR036353 GO:0003684|GO:0006289|GO:0043161
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01707 K10839 RAD23, HR23; UV excision repair protein RAD23 - zju:107429420 549.666
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma14g01707 Bma15g00085 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01707 Bma-Chr14:36193700 Bma10g00105 Bma-Chr10:1015612 2.27E-08 dispersed
Bma15g00427 Bma-Chr15:4630676 Bma14g01707 Bma-Chr14:36193700 1.30E-106 transposed
Bma14g01707 Bma-Chr14:36193700 Bma15g00085 Bma-Chr15:948331 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01707 Bma_Chr14 FPKM 7.718519 8.553821 14.544294 14.74856 44.001888 43.87685 43.482346 10.548243 9.627384 8.234846