Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01712 ATGATTTCTTCCGAAAGTGTCACCTGCGCTGTTGCTGGGAAAACTGCCAGAGTCTGCGACAGTTGCATCATTAGACGCGCGCGCTGGTACTGCGCTGCCGATGACGCCTTCCTTTGCCAGGCTTGCGACTCTTCCGTCCACTCAGCTAACTCCTTAGCCCGCTGGCACAGCCGCGTTCGTCTTAAAACCGCTTCTTTTAAACCATCCTCCGGCGAAGTCTCCTCCGATTACTCCGCTCCCTCGTGGCACCGGAGAAAGGCCAGGACGACGCGAAACGGGAAGCCGACGGGTCATCAACTAACGAAATCCGATGGCCCATCTCGGAATCTGTTCCCTCTTGTGCCGGAGGTGGGGGCAGATGAGACCTCTCATGAAGAAAACGAGGAGGAGCACCTTCTTTTTAGGGTACCCATATTCGATTCTTTTGTTGCAGAACTTTGTACTTCAGCGAATTCTAGCGAAGCAGCAGGAAATGATACTGGAATCGAATCGAAAGCTGTGTTATCAGCAAGTTATAGCCATGATATCGGTAGCTTACACGGATTCCTCCCATCGGACGTGGATCCAGCTGAGTTCGCCGCCGACGTCGAGAGCTTATTGGGGAGAGGTCTCGAAAATGAGTGTTTCGATATGGAGGAGCTGGGGCTGATGGGATCGAACGACAAGGACTGCAATTCTTTCGGGAGTGGAAGGATTAAACTGGAGGAAGAAGACGACCATGAAGCAGCGTGGGAGGTGCATGCAGTTGACACAGAGATCGACATGACGAGGGAGCAATTTGAGTTGAACTTTGACGATTACGACACTCCTCCGTCGTGTGCGGAGGAAGAAGACAAGAAGGCGGCTTTGGGACATGAAAATGGCGGCGGTGAGGATGATATTTACAGTTCGGAGAGGAAATTGAAGAAGAGAAAGATTGTTTTGAGGTTGAATTGGGATGCTGTTATTGCCGCTTGGAGTGGCCAAGGATCTCCATGGTGTTACGGGAAACGACCGGATTTTGAGCCTGATGATTGCTGGCCTCAGTGCACGGATTCATGTGGAGTGGAGGAACATGGTCAACGCCCGTACGGAGTTGGAATGGGAGATGGAGGAAGACAAGCCAGAGTTTCGAGGTACAAAGAGAAGCGTAGGAAGAGATTGTTTTCTAAGAAAATAAGGTACGAGGTTAGAAAATTGAATGCAGAGAAGAGGCCCAGAATGAAGGGTAGATTTGTGAAGAGAGCTTCCTTTGGAGCTCCCGGTTTTCAAAACGACGGACAAATAAACTTACGTGTTATTCATTAA 1287 50.19 MISSESVTCAVAGKTARVCDSCIIRRARWYCAADDAFLCQACDSSVHSANSLARWHSRVRLKTASFKPSSGEVSSDYSAPSWHRRKARTTRNGKPTGHQLTKSDGPSRNLFPLVPEVGADETSHEENEEEHLLFRVPIFDSFVAELCTSANSSEAAGNDTGIESKAVLSASYSHDIGSLHGFLPSDVDPAEFAADVESLLGRGLENECFDMEELGLMGSNDKDCNSFGSGRIKLEEEDDHEAAWEVHAVDTEIDMTREQFELNFDDYDTPPSCAEEEDKKAALGHENGGGEDDIYSSERKLKKRKIVLRLNWDAVIAAWSGQGSPWCYGKRPDFEPDDCWPQCTDSCGVEEHGQRPYGVGMGDGGRQARVSRYKEKRRKRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFGAPGFQNDGQINLRVIH 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 36277748 36279170 + Bma012460.1 Bma14g01712 95693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01712 428 CDD Bbox1_BBX-like 18 61 - -
Bma14g01712 428 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 413 - -
Bma14g01712 428 ProSiteProfiles CCT domain profile. 366 408 IPR010402 GO:0005515
Bma14g01712 428 MobiDBLite consensus disorder prediction 67 106 - -
Bma14g01712 428 MobiDBLite consensus disorder prediction 273 294 - -
Bma14g01712 428 MobiDBLite consensus disorder prediction 264 294 - -
Bma14g01712 428 Pfam CCT motif 366 408 IPR010402 GO:0005515
Bma14g01712 428 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Bma14g01712 428 SMART bboxneu5 14 61 IPR000315 GO:0008270
Bma14g01712 428 Pfam B-box zinc finger 16 58 IPR000315 GO:0008270
Bma14g01712 428 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 413 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01712 - - - qsu:112018537 477.633
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g01024 Bma14g01712 CCT
Bma14g01712 Bma15g00088 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00395 Bma-Chr1:3260893 Bma14g01712 Bma-Chr14:36277748 1.09E-15 dispersed
Bma06g01024 Bma-Chr6:46895484 Bma14g01712 Bma-Chr14:36277748 5.53E-19 dispersed
Bma14g01393 Bma-Chr14:26078129 Bma14g01712 Bma-Chr14:36277748 5.04E-14 dispersed
Bma14g01712 Bma-Chr14:36277748 Bma01g01259 Bma-Chr1:16771404 2.46E-08 dispersed
Bma14g01726 Bma-Chr14:36651941 Bma14g01712 Bma-Chr14:36277748 0 transposed
Bma14g01712 Bma-Chr14:36277748 Bma15g00088 Bma-Chr15:999469 0 wgd
Bma14g01712 Bma-Chr14:36277748 Bma03g00892 Bma-Chr3:8734336 7.12E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g308 . . . . . Bpe10g00936 Bma14g01712 Bma15g00088 Cmo04g01578 Cmo18g01030 . Cma18g01020 Car04g01559 . Sed08g0353 Cpe09g00303 Cpe01g01788 Bhi07g01322 Tan04g0850 Cmetu03g1640 Lac13g0498 Hepe01g1190 . . Cla05g02298 . . Cco05g2536 . . . . . Cone13ag0287 Cone19ag0279 Lsi04g00253 Csa05g02613 Chy10g01148 Cme10g00258 Blo06g00962 Blo11g00848 Bda07g01539 . Bpe11g01703 . . Bma06g01024 . Cmo04g02148 . Cma04g02049 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002023 2 2 2 3 2 2 4 2 2 2 2 2 4 2 2 4 2 2 2 2 2 2 1 2 1 2 2 4 2 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58415 PF06203 CCT 6.40E-17 CL0281 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01712 Bma_Chr14 FPKM 20.454128 24.499628 11.235331 13.201438 12.712914 11.688004 14.650016 21.208918 20.229183 23.173326