Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01718 ACAGAGGTGAACATGAGTTTTACACGAGATATGGAATATGAATACGAAAAACTAATTCGAAGAATGAATCCACCCAGGGTTGTAATTGATAATGAAGCCTGCAAGAATGCCACAGTGATAAGGGTGGATAGCGCGAATAAACACAGAACACTTCTTGACGTTGTACAAGTTCTTACTGATCTCAACCTCATCATAACCAAAGCTTATATTTCATCCGATGGTTGTTGGTTCATGGATGTTTTTAATGTCACTGACCAAGAAGGAAACAAGATTACAGACAGAGAAATTTTGGATTACATAACAAAGTCTATCGAATCGGAATCTTGTTTTGCATCTGCGATTGGATCAGTTGGTGTGAAAGCGTCAATGGATCACACATCGATAGAGCTAATTGGAAATGATAGACCTGGACTCCTCTCTGAAATGAGTGCAGTTCTTACCCATCTCAAATGCAATGTGGTCAGTGCTGAAATTTGGACCCATAATACACGGGCAGCGGCCGTGATACAAGTGACAGATGAGGAGACAGGGTCTGCCGTGAACGACCAAGAGAAACTATCTAGAATTAAGCAATTACTTTCCAACGTAATCAAAGGAAGCAAAAAATGTGGTGGAGCCAAGACTATAATCTCCCATGGGGTTACCCACGCGGATCGGAGGCTTCACCAGATGATGTTTCAAGATCGTGATTATGAACGAGTGGATGACGATGATGATGTTTCGGGCGAGAAGCAAAGACCAAATGTGAATATTGTTAATTGGCGTGATAAAGACTACTCTCTGGTGACCATCAAGAGTAAAGATCGACCGAAGCTTCTCTTCGACACAGTATGCACTTTGACGGACATGCAGTACGTCGTTTTCCATGCGAACATTGACGCAGAAGGGCCCGAAGCTTACCAGGAATATTATATAAGGCATGTAGATGGATCTCCTGTAAAATTGGATGCAGAGCGGCAAAGAATGATTCAATGTCTCGAAGCGGCTATTGAGAGAAGAGTTTCAGAGGGATTGAAGCTCGAACTATGCACGACAGACAGAGTCGGGCTTCTATCTGATGTCACCCGGATCTTCCGGGAGAACAGCCTCGATGTGACAAGAGCAGAAGTGAGCACAAAATCAGGGAACGCTATAAACACTTTTTACGTTCGAGATGCTTCCGGATATTCAGTCGATTCGAAGACGATAGATGCCATTAGACAAGCAATTGGACTAACTTTACTTAAAGTAAAAGGCAGTCCTGAAGAGTCTAAATCACTTGCTCAAGAGTCTTCAACCAGGTTCCTCTTTGGTAGCAGCCTCTTCAAGTCTAGATCTTTTGCAAACTTTGGGTTGATTCGACTC 1344 42.93 TEVNMSFTRDMEYEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHRTLLDVVQVLTDLNLIITKAYISSDGCWFMDVFNVTDQEGNKITDREILDYITKSIESESCFASAIGSVGVKASMDHTSIELIGNDRPGLLSEMSAVLTHLKCNVVSAEIWTHNTRAAAVIQVTDEETGSAVNDQEKLSRIKQLLSNVIKGSKKCGGAKTIISHGVTHADRRLHQMMFQDRDYERVDDDDDVSGEKQRPNVNIVNWRDKDYSLVTIKSKDRPKLLFDTVCTLTDMQYVVFHANIDAEGPEAYQEYYIRHVDGSPVKLDAERQRMIQCLEAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLDVTRAEVSTKSGNAINTFYVRDASGYSVDSKTIDAIRQAIGLTLLKVKGSPEESKSLAQESSTRFLFGSSLFKSRSFANFGLIRL 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 36390395 36392526 - Bma030735 Bma14g01718 95699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01718 448 SUPERFAMILY ACT-like 34 102 IPR045865 -
Bma14g01718 448 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-LIKE ISOFORM X1 11 447 - -
Bma14g01718 448 ProSiteProfiles ACT domain profile. 339 415 IPR002912 -
Bma14g01718 448 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 11 447 IPR040217 -
Bma14g01718 448 Gene3D - 338 404 - -
Bma14g01718 448 Gene3D - 125 200 - -
Bma14g01718 448 Pfam ACT domain 126 186 IPR002912 -
Bma14g01718 448 SUPERFAMILY ACT-like 122 196 IPR045865 -
Bma14g01718 448 ProSiteProfiles ACT domain profile. 127 205 IPR002912 -
Bma14g01718 448 SUPERFAMILY ACT-like 335 403 IPR045865 -
Bma14g01718 448 ProSiteProfiles ACT domain profile. 39 119 IPR002912 -
Bma14g01718 448 CDD ACT_ACR_3 259 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01718 - - - mnt:21409131 699.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01673 Bma-Chr14:35578550 Bma14g01718 Bma-Chr14:36390395 0 dispersed
Bma03g00041 Bma-Chr3:401013 Bma14g01718 Bma-Chr14:36390395 3.59E-09 transposed
Bma14g01718 Bma-Chr14:36390395 Bma15g00111 Bma-Chr15:1193385 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g2 Blo01g00462 . . . . Bpe10g00911 Bma14g01718 . Cmo04g01798 Cmo18g01113 . Cma18g01089 . Car18g01010 . Cpe09g00233 Cpe01g01517 . . . . . . . . . . . . . . Cone13ag0891 Cone19ag0890 Cone6ag0514 Cone9ag0526 . Csa05g02523 . . Blo06g00939 Blo11g00801 . . . . . . . . . Cma04g01711 . Car04g01745 . . Cpe07g00095 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002935 2 4 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 2 2 1 1 2 3 4 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01718 Bma_Chr14 FPKM 4.917874 3.253995 8.560951 7.257768 9.39912 9.932439 8.430706 9.851623 12.166524 10.382947