Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01735 ATGGAGGGAGTGTCGTCGACGACCGACCAGCAGAGCCTGGTGTCGTCTTTTCTTGAGATCGCTGTCGGCCAAACTGCCGAGACAGCTAGGCAGTTCTTGCAGGCTACAAGTTGGAAACTTGAAGATGCTATTCAGCTGTTCTATGTTGAGAATGAAGGTGGAGCAATTATGCCCGCATCAGATTCTACAACAAGGGAGAATTCTGGTGCAAGGGTCAATCCGAACACAAGTCAATCAGAAAATTACGATGGTGCTGAACCAGTTGGAGAAATCAATGGAGATGAAGTACGTGCTCCATTACCTGTTATAAGAGAAGCCCTGTACGATGATGGAATGCTGTATGGGTTTTCAAGAATGCAATATCCACCCAATGAATCAAGTACCTCCATTGCTTTCCGTAAATTTCAAGAAGAAATGAAACGCCCTGGTGTGTGGGAACCAGAACAAGGTGCTGCATCTACAACAGATAATGCTCGAGATAATCTTGCTTCTCTGTATAGTCCTCCTTTGCATCTTATGTTCAATGGACCCTTTGACAAGGCAAAAAGTGCTGCATCAGTCCAAGACAGATGGCTGCTTGTAAACTTGCAATCAACCAAAGAATTTAGCTCACACATGCTTAATCGAGATACATGGGCAAATGAGGCTGTTTCTCAAACCATTAGCAGCAATTTTATTTTTTGGCAGGTATATGATGATACAACTGAAGGTCAAAAGGTTTGCACCTATTACAAACTGGACTCTATTCCTGTGGTGCTTGTCATCGATCCTATTACAGGACTGAAAATGAGGTCGTGGTTGGGAATGGTTCAACCTGACCGGTTACTTGAGGATATCCTACCATTCATGGATGGAGGACCAAGGAATCATCATGTTACTCTGTCTCATAAACGTCCAAGAGCGAGCCCAACCAAACGTAAAATTATTGGTATGCTTGCTGACTTAATCAAACTTGTTTGGCTGTTGGCTGCAGAAGTTGACGAGGAAGATGAGGAAGTTCAAAAGGCATTGGCAGCTTCTCTGGGAAGTTTAGAGGACTCCATTAACGAGACTTCGATTGATAACAAAATTATACCCACCGACAAGGAGGATGAAAAATCTCCCACCCCAAAATCAACCTATCCACCGCTGCCTGAAGAGCCAACTGGTGACAAGTCTCTACTTTGCCGGGTTGGAATTCGTCTTCCCGATGGACGTAGGGTCCAGCGAAATTTTCTAAAAACTGATTCAGTTCAGCTGCTGTGGTCATTCTGTTCATCACAACTAGGGGAAAATGGCACGAAACTGTTTCGATTAGCGCATGCATTTCCGGGATCATCAAAGTCTCTGGATTATGATTCCCAATTAACCTTCGGAGAATCAGGGCTTGCCAATTCTATGATCTCAGTTACTTTGGAGTGA 1401 44.11 MEGVSSTTDQQSLVSSFLEIAVGQTAETARQFLQATSWKLEDAIQLFYVENEGGAIMPASDSTTRENSGARVNPNTSQSENYDGAEPVGEINGDEVRAPLPVIREALYDDGMLYGFSRMQYPPNESSTSIAFRKFQEEMKRPGVWEPEQGAASTTDNARDNLASLYSPPLHLMFNGPFDKAKSAASVQDRWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISSNFIFWQVYDDTTEGQKVCTYYKLDSIPVVLVIDPITGLKMRSWLGMVQPDRLLEDILPFMDGGPRNHHVTLSHKRPRASPTKRKIIGMLADLIKLVWLLAAEVDEEDEEVQKALAASLGSLEDSINETSIDNKIIPTDKEDEKSPTPKSTYPPLPEEPTGDKSLLCRVGIRLPDGRRVQRNFLKTDSVQLLWSFCSSQLGENGTKLFRLAHAFPGSSKSLDYDSQLTFGESGLANSMISVTLE 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 37300713 37306801 + Bma012501.1 Bma14g01735 95716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01735 466 Gene3D - 380 465 - -
Bma14g01735 466 SUPERFAMILY Thioredoxin-like 156 287 IPR036249 -
Bma14g01735 466 SUPERFAMILY Ubiquitin-like 375 464 IPR029071 -
Bma14g01735 466 SMART 45neu3 161 284 IPR006577 -
Bma14g01735 466 MobiDBLite consensus disorder prediction 58 83 - -
Bma14g01735 466 Pfam UBA-like domain 12 52 - -
Bma14g01735 466 CDD UBX 390 464 - -
Bma14g01735 466 Gene3D - 7 51 - -
Bma14g01735 466 ProSiteProfiles UBX domain profile. 384 464 IPR001012 GO:0005515
Bma14g01735 466 PANTHER UBX DOMAIN-CONTAINING PROTEIN 4 466 - -
Bma14g01735 466 PIRSF UCP037991_UBX_2_7 1 466 IPR017346 -
Bma14g01735 466 PANTHER FAS-ASSOCIATED PROTEIN 4 466 - -
Bma14g01735 466 CDD UAS 173 285 - -
Bma14g01735 466 SUPERFAMILY UBA-like 8 48 IPR009060 GO:0005515
Bma14g01735 466 CDD UBA_TAP-C_like 17 48 - -
Bma14g01735 466 Gene3D Glutaredoxin 175 286 - -
Bma14g01735 466 MobiDBLite consensus disorder prediction 352 385 - -
Bma14g01735 466 Pfam Thioredoxin-like 178 257 - -
Bma14g01735 466 MobiDBLite consensus disorder prediction 58 92 - -
Bma14g01735 466 Pfam UBX domain 389 439 IPR001012 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01735 K24350 UBXN7; UBX domain-containing protein 7 - qsu:112014202 625.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01735 Bma-Chr14:37300713 Bma03g00788 Bma-Chr3:7271956 3.59E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1103 . . . . . . Bma14g01735 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g01725 . . . . . . . . . . . . . . . . . . . Cla11g01360 Cam11g1416 Cec11g1445 Cco11g1441 Clacu11g1575 . Cre11g1816 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007011 1 2 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 2 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01735 Bma_Chr14 FPKM 0.597884 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0