Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01783 AGGGACATGATTCGAACTGTACGTGCATGTAAAACGGCAGCAGAAGAACGTGCTGTTATAAGAAAAGAGTGTGCTGCTATTCGAGCAGCAATTAATGAAAATGATCACGATTATAGGCACCGTAACCTTGCGAAGCTGATGTTCATTCACATGCTTGGTTACCCAACACATTTTGGTCAAATGGAGTGCTTGAAGTTGATTGCATCAGCTGGTTTCCCTGAGAAGAGAATAGGATATCTTGGCCTTATGTTGCTTCTTGATGAAAGACAAGAAGTTTTGATGTTGGTCACAAACTCATTAAAACAAGATTTGAATCATTCAAACCAGTATATTGTTGGACTTGCTCTTTGTGCTTTAGGAAATATTTGCTCAGCAGAAATGGCAAGGGACCTTGCACCAGAAGTTGAAAGACTATTGCAGTTTAGAGACCCTAATATTCGGAAGAAAGCAGCATTGTGTTGTGTAAGGATTATAAAGAAAGTCCCAGACCTAGCCGAGAATTTTGTAAATCCTGCAACCTCTTTGCTTAAAGAAAAGCACCATGGTGTGCTCATCACAGGAGTTCAACTTTGTACAGATCTTTGTAAAGTTAGTTCAGAAGCTCTATACTATTTTAGAAAGAAATGCACAGAGGGCTTGGTCAAGACTCTTAAGGATTTGGCGAACAGTTCGTATACACCAGAGTTTGACGTAGCTGGTATTACAGACCCATTCCTCCATATTCGGTTGCTTAGGTTTCTGCGTGTATTGGGCCATGGAGATGCTGATGCAAGTGACTGTATGAATGATATACTTGCACAGGTGGCTACGAAAACTGAGTCAAACAAAAATGCAGGGAATGCGATTCTATATGAATGTGTTGAAACTATTATGAGCATTGAGGATAATGGAGGTTTACGTGTGCTGGCCATAAATATATTGGGAAGATTTTTATCAAATCGTGACAACAATATCAGATATGTTGCATTAAACATGCTCATGAAGGCTATTACGGTCGATGCTCAAGCAGTACAGAGGCATCGAACAACGATATTGGAATGTGTAAAGGATTCAGATGCTTCAATTCGTAAAAGGGCCCTTGAGCTTGTTTATCTTTTAGTGAACGACAGTAATGTAAAGTCTCTTACCAAAGAATTGATTGAATATCTTGAAGTAGCCGATGAAGAATTTAAGGGAGATCTTACGTCAAAAATTTGCACAATTGTTGCAAAGTTTTCCATAGAGAAGATTTGGTACATTGATCAAATGCTTAAGGTTCTTTCCAAGGCTGGAAATTTTGTTGAAGATGAGGTTTGGCATGCACTTATTGTTATGATAAGCAATGCTACTGACCTCCATGGATACACTGTAAGAGCATTATACAGAGTGTTCCAATCATCTATTGAACAGGAAAGTCTTGTTCGAGTGGCTGTTTGGTGCATTGGGGAATATGGTGACATGTTGGTTAATAATGTTAAGATGCTAGACACAGAGGATCCTATAACAGTGACCGAGTCTGACATCGTGGATGTCATAGAGACTGCTATTAAGCGCCATACTTCTGATCTTACCACTCAGTCAATGGCATTGGTTTCCCTGTTGAAACTTTCTTCTCGTTTTCCTTCTATATCCGGGAGGATCAAAGATATAATTGTCCAATTCAAAGGAAGCTTGGTTCTTGAATTGCAGCAAAGATCTATTGAATTCAACTCAATCACTTCAAGGCATCAAAATATCAGGTCCACGTTAGTTGAAAGAATGCCAGTTCTGGACGAAGCAACATTTCTCGGAAGGAAGGCAGGGGCAATGCCTACAACTGTTTCAACTCCGAACGGGGCATCCATTAATCTTCCAAATGGAGTTGCTAAAACTACTGCAGCTCCACTGGTAGATTTACTTGATCTGAGTTTAGATGATGCCCCTGAGTCTATCTCTTCTGGCGGTGAATTCCTCCAGGATCTTCTCGGTATTGATTTATCACCGGCTCCGAATCAGTCTGGTGCGAAAGACTCGCAGAGAACTGGTACAGATGTTCTGCTGGATCTTTTGTCTATCGGAACACCTTCAACCGTATCATCAAATGATATATCAGCCAAATCAGATAACAAAACACCTATTGCATTAGATGGGCTCTCGTCTCTCTCGACACTTCCCACACGGGCCACTTCTGCTGCTGGAGCTGCTCCTGCTGTGGATTTGTTAGACGGCTTTGCACATAACCCAACAACTTCTGACGGCGGTCCACAATATCCATCTGTTGTTGCATACGAGAGCAGCTCCTTGAGAATGACTTTTAACTTCTCTAAATTGCCTGGCAGTCCACAAACAACGTTAATCCATGCCACTTTTAATAATTTATCTCCAAATGCCTATTCGAATTTTATTTTTCAAGCCGCAGTTCCAAAGTTTCTTCAACTGCAGCTAGACCCAGCCAGCGGTAGTACTCTCCCTGGAAGTGGCAATGATTCCATTACTCAAACTTTGAGAGTGACTAACAACCAACAAGGAAAGAAGTCTCTTGTCATGCGCATAAGGATAGCTTACAAGCTGAATGACAAAGATGTTTTGGAGGAAGGACAAGTCAACAATTTTCCTCGCGGCTTA 2583 41.08 RDMIRTVRACKTAAEERAVIRKECAAIRAAINENDHDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHSNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCCVRIIKKVPDLAENFVNPATSLLKEKHHGVLITGVQLCTDLCKVSSEALYYFRKKCTEGLVKTLKDLANSSYTPEFDVAGITDPFLHIRLLRFLRVLGHGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRTTILECVKDSDASIRKRALELVYLLVNDSNVKSLTKELIEYLEVADEEFKGDLTSKICTIVAKFSIEKIWYIDQMLKVLSKAGNFVEDEVWHALIVMISNATDLHGYTVRALYRVFQSSIEQESLVRVAVWCIGEYGDMLVNNVKMLDTEDPITVTESDIVDVIETAIKRHTSDLTTQSMALVSLLKLSSRFPSISGRIKDIIVQFKGSLVLELQQRSIEFNSITSRHQNIRSTLVERMPVLDEATFLGRKAGAMPTTVSTPNGASINLPNGVAKTTAAPLVDLLDLSLDDAPESISSGGEFLQDLLGIDLSPAPNQSGAKDSQRTGTDVLLDLLSIGTPSTVSSNDISAKSDNKTPIALDGLSSLSTLPTRATSAAGAAPAVDLLDGFAHNPTTSDGGPQYPSVVAYESSSLRMTFNFSKLPGSPQTTLIHATFNNLSPNAYSNFIFQAAVPKFLQLQLDPASGSTLPGSGNDSITQTLRVTNNQQGKKSLVMRIRIAYKLNDKDVLEEGQVNNFPRGL 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 38377313 38399279 - Bma030740 Bma14g01783 95764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01783 861 Pfam Adaptin N terminal region 16 568 IPR002553 GO:0006886|GO:0016192|GO:0030117
Bma14g01783 861 SUPERFAMILY ARM repeat 15 583 IPR016024 -
Bma14g01783 861 Pfam Adaptin C-terminal domain 744 858 IPR008152 GO:0006886|GO:0016192
Bma14g01783 861 Gene3D - 1 584 IPR011989 -
Bma14g01783 861 SMART alpha_adaptinc2 738 858 IPR008152 GO:0006886|GO:0016192
Bma14g01783 861 Gene3D - 731 859 - -
Bma14g01783 861 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 741 858 IPR008153 -
Bma14g01783 861 PANTHER AP-1 COMPLEX SUBUNIT GAMMA 1 860 - -
Bma14g01783 861 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 1 860 - -
Bma14g01783 861 PIRSF AP1_gamma 1 861 IPR017107 GO:0005794|GO:0016192|GO:0030121
Bma14g01783 861 SUPERFAMILY Clathrin adaptor appendage domain 720 860 IPR013041 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01783 K12391 AP1G1; AP-1 complex subunit gamma-1 - qsu:112015360 1384.78
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma14g01783 Bma15g00193 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00043 Bma-Chr6:697581 Bma14g01783 Bma-Chr14:38377313 1.18E-27 dispersed
Bma06g00048 Bma-Chr6:817159 Bma14g01783 Bma-Chr14:38377313 1.70E-27 dispersed
Bma07g00179 Bma-Chr7:2327838 Bma14g01783 Bma-Chr14:38377313 1.71E-53 dispersed
Bma11g00211 Bma-Chr11:1842345 Bma14g01783 Bma-Chr14:38377313 3.79E-42 dispersed
Bma14g01783 Bma-Chr14:38377313 Bma15g00297 Bma-Chr15:2886334 1.85E-07 dispersed
Bma14g01763 Bma-Chr14:37925339 Bma14g01783 Bma-Chr14:38377313 0 transposed
Bma14g01764 Bma-Chr14:37928867 Bma14g01783 Bma-Chr14:38377313 0 transposed
Bma14g01783 Bma-Chr14:38377313 Bma15g00193 Bma-Chr15:1966600 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g748 . . . . . . Bma14g01783 Bma15g00193 . . . . . . . . Cpe01g01517 . . . . . . . . . . . . . . Cone13ag1027 Cone19ag1018 . Cone12ag0633 Lsi04g00530 Csa05g02352 Chy10g00919 Cme10g00507 Blo06g00868 Blo11g00903 Bda07g01592 . . . . . . . . Cma04g01713 . Car04g01746 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005001 2 3 2 3 1 1 2 1 1 1 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01783 Bma_Chr14 FPKM 5.904914 4.836087 2.13725 2.492702 0.871366 0.0 1.15663 3.305345 5.038153 6.377006