Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01788 ATGGCGGACTCTCCGTCTGCTGCCACTGAATCCAATTCTCAGTCTCAAGAACCTGAGAATCGCGTTTCGGATATGAATCAAACCGATTCGGTTCCCTCGCAACTACAATCTTCTGGTTCGGCGTCTATTCCTGTTGCAGCTAATCCTAACTTGAATCCTCCTCAGATATCTCCTCTTCAGCCTCCTCTGTCCTTTGCCCCTCCTCCGGCAGCACCGTCGTTTCGGCCTTTACCTCTTTATACTCCGCAGTTTCCACACCCTGGCTTTCCGAACGTGAACTATGTGAATCCTGGCATTCAACCGCCCGGTTTCAGTTCTGGGGCTCCTGGTTTGATAAGTGGCTCAGTTTCGGCTCCTCAGCAGATGATGCCTTATCAGGTTTTCCCTGGACAGGCTTCTAATCCGGCTATGAGACCCTATGCACCTATTCCAAATGGTTATGCCACGATCCCGGCCGCAGTTCCTCAAGGAACTATACCTCCCGCAGGTGGGTTGTTATCTTTTGATTTTGTTTGTTACTTAAACCTACTGGTTCTTACACATAATTCCTCATCTACTGTGTCTACTTTATCTGGAGTTTCTTTTGTGTTTGTTCGTGCAGGAGTTCCTCGTTTTACTTCTCCATATGCATCTGTGGTGCGGGGTCCATTTCCTCCTCGGCCACCCGGAGCCATTGGTATCATTCCAACGTTGTCACGTCCTCTTCTTCCAGGTGTACCTGGCATTCGCCCTATGATGCCTTTGGTGATGAGGCCTGTCATTCCTCCAAGTGTTACCCCCGCTGAGTTACCACAAACCACAATTTATATTGGCCGAATAGCTCAAACTGTGGAAAATGATTTCATGTTATCTCTTCTTCAGTTATGTGGACCTGTGAAGAGTTGGAAACGTGTTCAAGACCCTACGAATGGGACTCCTCGAGCATTCGGCTTTTGTGAGTTTGAGTCTGCCGAAGGCGTACTTCGTGCTATACGACTGCTTACCAATTTTAATGTAGATGGGCAAGAACTAAAGTTAAAAGGTACCCAAGCAACGAGAAAATATCTACGTCAGTATGTCGAAAAGAAAATAGAAAACTCAAAAAAGCTGAAAGAAACTCAGGATGGAGAAGCAAAAGAAGAGGACGGAAGTGCAGTAGTTGCGGAGAAGAGTGATACTGTCAAATCTGTTGAGGACTCAAAAGAAGATAATGATCCGGGGGAGAAAGAAGATCGTGAGATTGCCATTTCTGCAATTGTATCTAATGAGGACAAGGAAGCTGATCGAGAGGCTTTGCAAAAGCTTACAAGCTCAATAGAGGCGAGGTTGAAGACCCGACCATTGCCTCAGCCCCCTGCTCAAGCGGTTGATGATCCCTCTGGTAATGCAGATCCTTCTGCCAAGATGAGAGATGGAGACTCAGATGGTGATGTGACAAGAAGTGATGCTGTTGATGATAAAAATGATGCGGAAGACATCAAACAAACAAGTGATCATGACAGGCCCGAGACAAGCTCTCCTGAAAGAAGTAGGAGGTATGATAGGAGAAGCAGAGACAGAGATAGAGAACGAGACGTAAAAAGGGAAAAGGAGCGAGAGATTGAGAGATATGAGAGAGAAACAGAGCGAGAACGCATTAGGAAAGAGAGAGAGCAAAGAAGAAAGGTTGAGGAAGCTGAGCGTCAATATGAGGAATGCCTTAAAGAGTGGGAATATAGGGAAAGGGAAAAGGAGAAACAGAGGCAGTATGAAAGGGATAAGGAAAAAGAAAGGGAACGCAAGAGGAAGAAGGACATAATATATGATGAAGACGACGAGGATGACGATTCGAGAAAAAAGTGGCGCAGGAGTGTGTTGGAGGAAAAGAGGAAAAAGAAGCTTAGGGAAAAAGAAGACGATTTGGCTGACAGACAAAAAGAAGAGGAAGAAATTGCAGAGGCAATGAGGAGAGCTGATGAAGAACAAAAGCAGAAACAACAAAGAGAAGCTTTAAAACTGCTGTCTGTGGAAGTTGAGCATGATGATGTTAAAACTGTTCTTGCAGAAGAGTCTTCAGTAGAAATCAAAGATAAGGTTGTTGATCAGCACTTTGAAGGCGACATTGTTTGTGAGAATCACATCGGTATTAATGATATTTTCTTGGAATTATTTTGGCGTTATTATTTGACTCTCTTTTCTTTTAAATATTCAAAATGCCATATGATTGTAGACAACAATGATGGAGTTTTACTCAATGGTGTAGGTTTTGAATCAACCTTGGTATCAGGTACTGCATCAGATCAACAGCATAGTGGTAATGTGCCTACAAGAAGGTTGGGATTTGGTCTAGTTGGATCAGGAAAGCGAACTGCTGTACCATCTGTTTTCCATGAAGAAGATGATGATGAAGCACATAAGGAGAAAAAGATGAGGCCCCTCGTACCAATAGATTACTCAGCAGAGGAGCTGGAGGCAGTTCAACCTCCCACTAGTGGAGTACAACCGCCAAACTTGGCTGCAGCAGCCGAGTTTGCGAAACGTATACATGAACTGCAGGAGCGAATGAGACCTTGGATATCGAAAAAGATCACCGAGTTTTTGGGGGAGGAAGAAGCAACACTGGTCGATTACATTGTTTCGAGCACTCAAGAACATGTGAAGGCATCACAAATGCTGGAGCTGCTTCAATCAATTTTGGACGAAGAAGCCGAAATGTTTGTTCTGAAGATGTGGAGGATGCTCATCTTTGAAATAAAGAAGGTGGAGACAGGTATAGCTTCAAGATCAAAAGCATGA 2754 44.41 MADSPSAATESNSQSQEPENRVSDMNQTDSVPSQLQSSGSASIPVAANPNLNPPQISPLQPPLSFAPPPAAPSFRPLPLYTPQFPHPGFPNVNYVNPGIQPPGFSSGAPGLISGSVSAPQQMMPYQVFPGQASNPAMRPYAPIPNGYATIPAAVPQGTIPPAGGLLSFDFVCYLNLLVLTHNSSSTVSTLSGVSFVFVRAGVPRFTSPYASVVRGPFPPRPPGAIGIIPTLSRPLLPGVPGIRPMMPLVMRPVIPPSVTPAELPQTTIYIGRIAQTVENDFMLSLLQLCGPVKSWKRVQDPTNGTPRAFGFCEFESAEGVLRAIRLLTNFNVDGQELKLKGTQATRKYLRQYVEKKIENSKKLKETQDGEAKEEDGSAVVAEKSDTVKSVEDSKEDNDPGEKEDREIAISAIVSNEDKEADREALQKLTSSIEARLKTRPLPQPPAQAVDDPSGNADPSAKMRDGDSDGDVTRSDAVDDKNDAEDIKQTSDHDRPETSSPERSRRYDRRSRDRDRERDVKREKEREIERYERETERERIRKEREQRRKVEEAERQYEECLKEWEYREREKEKQRQYERDKEKERERKRKKDIIYDEDDEDDDSRKKWRRSVLEEKRKKKLREKEDDLADRQKEEEEIAEAMRRADEEQKQKQQREALKLLSVEVEHDDVKTVLAEESSVEIKDKVVDQHFEGDIVCENHIGINDIFLELFWRYYLTLFSFKYSKCHMIVDNNDGVLLNGVGFESTLVSGTASDQQHSGNVPTRRLGFGLVGSGKRTAVPSVFHEEDDDEAHKEKKMRPLVPIDYSAEELEAVQPPTSGVQPPNLAAAAEFAKRIHELQERMRPWISKKITEFLGEEEATLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETGIASRSKA 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 38477781 38483128 - Bma012559.2 Bma14g01788 95769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01788 917 Gene3D - 261 376 IPR012677 -
Bma14g01788 917 MobiDBLite consensus disorder prediction 433 554 - -
Bma14g01788 917 MobiDBLite consensus disorder prediction 567 605 - -
Bma14g01788 917 CDD RRM_RBM25 266 349 IPR034268 -
Bma14g01788 917 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 9 835 - -
Bma14g01788 917 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 835 916 - -
Bma14g01788 917 SUPERFAMILY RNA-binding domain, RBD 260 339 IPR035979 GO:0003676
Bma14g01788 917 MobiDBLite consensus disorder prediction 1 70 - -
Bma14g01788 917 Coils Coil 617 657 - -
Bma14g01788 917 Gene3D PWI domain 813 913 - -
Bma14g01788 917 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 344 IPR000504 GO:0003723
Bma14g01788 917 SUPERFAMILY PWI domain 839 906 IPR036483 GO:0006397
Bma14g01788 917 MobiDBLite consensus disorder prediction 54 70 - -
Bma14g01788 917 Coils Coil 566 586 - -
Bma14g01788 917 Pfam PWI domain 840 903 IPR002483 GO:0006397
Bma14g01788 917 MobiDBLite consensus disorder prediction 363 406 - -
Bma14g01788 917 SMART pwi_2 833 906 IPR002483 GO:0006397
Bma14g01788 917 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 338 IPR000504 GO:0003723
Bma14g01788 917 ProSiteProfiles PWI domain profile. 817 917 IPR002483 GO:0006397
Bma14g01788 917 SMART rrm1_1 267 340 IPR000504 GO:0003723
Bma14g01788 917 MobiDBLite consensus disorder prediction 461 554 - -
Bma14g01788 917 Coils Coil 513 562 - -
Bma14g01788 917 MobiDBLite consensus disorder prediction 1 53 - -
Bma14g01788 917 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 9 835 - -
Bma14g01788 917 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 835 916 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01788 K12822 RBM25, S164; RNA-binding protein 25 - zju:107428625 660.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01788 Bma-Chr14:38477781 Bma01g00783 Bma-Chr1:7174568 2.29E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01788 Bma_Chr14 FPKM 22.686926 23.176771 20.36743 21.938192 14.165178 14.298781 15.695988 31.282394 25.068953 26.218878