Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01793 ATGGAAGCCATTCTTGCTTCCGGTGCTGCTTACCAGCTCCGACCCCGTTTCAACCACCCATTCTCCTCCCCATTTTCCCTCACCTTCCCGGAAAGTAAAAGGAAGACTCTCAAAACTTCCGAAACTCCCCGACTTCGTCTTCCTCTCAGACTCTCTGCAACTATGGCCTCCAATGCGCCGTCTATACCCTCTGAAATGAAGGCCTGGTTATACGCTGAATATGGCAGCCCCGGCGTTTTGAAGTTCGAAACTACCGTTGCGGTGCCGGAAGTGAAGGAGGACCAAGTTCTTATCAAGGTCGTTGCTGCTGCTCTTAATCCTGTTGATTCTAAGAGGATGTTGGGAAAATTCAAGGCCTCTGATTCTCCTCTTCCGACTGTTCCGGGCTACGACGTTGCCGGAGTAGTAGTAAAAGTAGGCAGAGAGGTGAAGGAGCTAAAGGAGGGAGATGAAGTTTATGGAAATATAAATGAGAAACCACTGGATCAGCCCAAGCAATTTGGATCTTTAGCAGAGTACACGGCTGTTGAGGAGAAACTAATGGCTTTGAAACCCAAAAATCTGGATTTTGCTCAGGCCGCCGGGCTGCCTTTGGCCATTGAGACTGCCTATGAGGGTCTTGAAAAGACTGGTTTTGCAGCCGGTAAATCGCTCTTGGTTCTTAATGGTGCTGGTGGAGTTGGAAGCCTAGTTATTCAGCTGGCCAAACAAGTGTTTGGAGCTTCAAAAGTTGCAGCCACTGCCAGCACTGGAAAGCTGGAATTTTTGAAGAGCTTGGGCGTCGATCTACCCATCGACTATACAAAACAAAACATCGAAGATCTCCCGGAGAAATTCGATGTTGTATTCGATGCAATCGGTCAGTGTGAGAAGGCAGTGAAAGCAGTGAAAGAAGGGGGAAGTGTGGTGGTTCTGACCGGAGCCGTAACCGCGCCCGGGTTCAGGTTCGTAGTGACCTCCGACGGAGAAGTGTTGAAGAAACTGAATCCATATATAGAGAGTGGGAAGGTGAAGCCAATTGTGGACTCAAATGGGCCATTCCCTTTCACTAAGGTGGATGGAGCTTTCTCTTACATTGATACAAACAGGGCAACTGGTAAGGTTGTTATACACCCAATTCCTTGA 1125 48.53 MEAILASGAAYQLRPRFNHPFSSPFSLTFPESKRKTLKTSETPRLRLPLRLSATMASNAPSIPSEMKAWLYAEYGSPGVLKFETTVAVPEVKEDQVLIKVVAAALNPVDSKRMLGKFKASDSPLPTVPGYDVAGVVVKVGREVKELKEGDEVYGNINEKPLDQPKQFGSLAEYTAVEEKLMALKPKNLDFAQAAGLPLAIETAYEGLEKTGFAAGKSLLVLNGAGGVGSLVIQLAKQVFGASKVAATASTGKLEFLKSLGVDLPIDYTKQNIEDLPEKFDVVFDAIGQCEKAVKAVKEGGSVVVLTGAVTAPGFRFVVTSDGEVLKKLNPYIESGKVKPIVDSNGPFPFTKVDGAFSYIDTNRATGKVVIHPIP 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 38531797 38533667 + Bma012564.1 Bma14g01793 95774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01793 374 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 215 236 IPR002364 GO:0008270|GO:0016491
Bma14g01793 374 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 45 374 IPR044626 GO:0016628
Bma14g01793 374 SMART PKS_ER_names_mod 75 370 IPR020843 GO:0016491
Bma14g01793 374 Gene3D - 207 321 - -
Bma14g01793 374 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 45 374 - -
Bma14g01793 374 Gene3D - 73 370 - -
Bma14g01793 374 Pfam Zinc-binding dehydrogenase 259 370 - -
Bma14g01793 374 Pfam Alcohol dehydrogenase GroES-like domain 94 155 IPR013154 -
Bma14g01793 374 CDD MDR_like_2 66 370 - -
Bma14g01793 374 SUPERFAMILY GroES-like 63 220 IPR011032 -
Bma14g01793 374 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 188 311 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01793 K18980 EO, FaQR; 2-methylene-furan-3-one reductase [EC:1.3.1.105] - tcc:18609461 522.702
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00514 Bma-Chr13:10023580 Bma14g01793 Bma-Chr14:38531797 3.94E-135 dispersed
Bma14g01793 Bma-Chr14:38531797 Bma12g00464 Bma-Chr12:12158878 5.75E-15 dispersed
Bma07g01488 Bma-Chr7:50546818 Bma14g01793 Bma-Chr14:38531797 3.31E-21 transposed
Bma08g00371 Bma-Chr8:8176849 Bma14g01793 Bma-Chr14:38531797 4.10E-12 transposed
Bma09g00580 Bma-Chr9:42903192 Bma14g01793 Bma-Chr14:38531797 8.51E-32 transposed
Bma11g00377 Bma-Chr11:4088705 Bma14g01793 Bma-Chr14:38531797 4.72E-21 transposed
Bma15g00668 Bma-Chr15:10582355 Bma14g01793 Bma-Chr14:38531797 2.99E-31 transposed
Bma13g00524 Bma-Chr13:10569370 Bma14g01793 Bma-Chr14:38531797 1.83E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g707 . . . . . . Bma14g01793 . . . . . . . Sed01g1019 . Cpe01g01529 Bhi07g01725 Tan04g1230 Cmetu09g1229 Lac13g0203 Hepe10g1643 . . Cla05g02539 Cam05g2729 Cec05g2760 Cco05g2800 Clacu05g2730 Cmu05g2583 Cre05g2697 Cone13ag1038 . . . Lsi04g00547 Csa05g02339 Chy10g00906 Cme10g00520 . Blo11g00915 Bda07g01601 . . . . . . Cmo04g02843 . Cma04g01730 . Car04g01763 . . . . . . . . . . . . . . . . . . . Chy09g00330 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011084 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01793 Bma_Chr14 FPKM 0.0 0.0 0.0 0.234517 0.0 0.0 0.0 0.0 0.0 0.128546