Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01799 ATGGCGATTCTAGCATCACTAACAGTAGTAAACCTCTTCTCCAACCTCCCCTCAGCTAAACCTCCCAATGAAGTATTATCCTCCACTTCCTTTGCTCCTCCTCCTCCTCCCTCCATTCTTATTCCCAAATACCCTCCACCCAAACCCAAAATTCCTCCTCTTGCTGCGGCGCCACCCGATTCCGCTATCAAGACTTTCCACCGCCGAGCAAAATACTTCAAACCGATTAAGGAAGGCGTCGTCTCCTCCGACGGCGATCGTTCCGTCGTCGTCGGTGATTCCGGCGTATCGTATCTACTTCCCGGAGCTCCATTCGAGTTTCAATACAGCTACTCCGAGACGCCCAAGGTAAAGCCACTGGCGATTCGGGAGCCGGCTTTCTTGCCGTTTGCGCCTCCTACTATGGCGAGGCCTTGGACTGGTAATGCCCCATTGAAGAGCTCCAAAAAAAAGATTCCTCTTTTCGACTCGTTCAATCCGCCCCCACCCGGGTCGAAAGGAGTGAAGCATGTGGAAATGCCAGGTCCATTTCCATTTGGAAAGGATCCAAAGGAAGGGAAAAATCGGGAGGAGATACTCGGGGAGCCACTGAAGAAATGGGAGATTCAAATGCTCATAAAGCCGCTTTTATCCGATAATCGTCAAGTTAATCTAGGTGGAAGAGATGGATTGACCCATAATATGTTGGAATTGATTCATTTCCATTGGAAGCGGCGGAGAGTTTGTAAAATTAAATGTAAAGGAGTTCCCACTGTTGATATGCGCAACATTTGCCGTTGCATTGAGGAAAAAACCGGAGGAAAAATAATATATCGAAAGGGTGGTGTATTGTATCTTTTTCGGGGAAGAAACTACAACTATCGGACCCGTCCACAATATCCAGTGATGCTCTGGAAGCCAGCAGCTCCTGTCTATCCAAAACTTATTCAAGACGCACCGGAAGGATTAACAAAAGACGAAGCTGATGAGCTTCGGATCAAAGGAAAAAAACTTTTGCCAATTTGCAAATTAGTGAAAAATGGTGTCTACATTTCCCTGGTGAGTGATGTTAGACATGCTTTTGAAGGAAGTTCGTTGGTGAAAATCGATTGCACTGGAATGCATCCAACTGATTATAAGAAGTTAGGAGCTAAGCTTAAGGAATTGGTTCCTTGTGTTCTGTTATCTTTTGATGACGAACAGATCCTAATGTGGAGGGGAAGAGATTGGAAATCAATGTTTCCACAGCCTACTCCTTCGTTTCTTCCGGGAGCTGTAATCCCCGATCGTGGGACAGAGGAACACAATTCGAAAACAGACAGCATAAACAACGCCTTTCCTTACAAAAGTTCGAAAATGTTGTCGCTTTGGAAAAGAGCGATCAACTCGAACAGAGCATTGTTACTCGACGAAAGACTTGGCCCCAATGAGCTTTTGGCGAAAGTGGAGGAATTTGAGGGTGTTTCACAGGCAACAGAGCACTCTCATCCGGTCCAAATTTTATCATCTTCGGATAACACGAGCAGTTCAATGGCGGAGTTCGAGATAGATCGTGAAAAGGGAGACAATTGGGTGGATGAAGAAGATGACATATACAGTAGTGACGAGGACGAAGACGACGGAAATGATCCATTTGTTAAAGGAAACTCATCTCCAATCCCGATCGGATCATTGCCCATCGACAGAATAGCCAACAAGCTTGGCCTTCATTGA 1692 45.92 MAILASLTVVNLFSNLPSAKPPNEVLSSTSFAPPPPPSILIPKYPPPKPKIPPLAAAPPDSAIKTFHRRAKYFKPIKEGVVSSDGDRSVVVGDSGVSYLLPGAPFEFQYSYSETPKVKPLAIREPAFLPFAPPTMARPWTGNAPLKSSKKKIPLFDSFNPPPPGSKGVKHVEMPGPFPFGKDPKEGKNREEILGEPLKKWEIQMLIKPLLSDNRQVNLGGRDGLTHNMLELIHFHWKRRRVCKIKCKGVPTVDMRNICRCIEEKTGGKIIYRKGGVLYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQDAPEGLTKDEADELRIKGKKLLPICKLVKNGVYISLVSDVRHAFEGSSLVKIDCTGMHPTDYKKLGAKLKELVPCVLLSFDDEQILMWRGRDWKSMFPQPTPSFLPGAVIPDRGTEEHNSKTDSINNAFPYKSSKMLSLWKRAINSNRALLLDERLGPNELLAKVEEFEGVSQATEHSHPVQILSSSDNTSSSMAEFEIDREKGDNWVDEEDDIYSSDEDEDDGNDPFVKGNSSPIPIGSLPIDRIANKLGLH 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 38592848 38597626 - Bma012571.1 Bma14g01799 95780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01799 563 Gene3D - 197 293 IPR035920 -
Bma14g01799 563 Gene3D - 316 410 IPR035920 -
Bma14g01799 563 SUPERFAMILY YhbY-like 316 406 IPR035920 -
Bma14g01799 563 MobiDBLite consensus disorder prediction 483 551 - -
Bma14g01799 563 PANTHER CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC 1 560 - -
Bma14g01799 563 Pfam CRS1 / YhbY (CRM) domain 316 399 IPR001890 GO:0003723
Bma14g01799 563 Pfam CRS1 / YhbY (CRM) domain 213 281 IPR001890 GO:0003723
Bma14g01799 563 SMART CRS1_YhbY_2 316 399 IPR001890 GO:0003723
Bma14g01799 563 SMART CRS1_YhbY_2 197 281 IPR001890 GO:0003723
Bma14g01799 563 ProSiteProfiles CRM domain profile. 195 292 IPR001890 GO:0003723
Bma14g01799 563 MobiDBLite consensus disorder prediction 485 504 - -
Bma14g01799 563 MobiDBLite consensus disorder prediction 521 535 - -
Bma14g01799 563 ProSiteProfiles CRM domain profile. 314 410 IPR001890 GO:0003723
Bma14g01799 563 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 1 560 IPR044599 GO:0000373
Bma14g01799 563 SUPERFAMILY YhbY-like 196 291 IPR035920 -
Bma14g01799 563 MobiDBLite consensus disorder prediction 505 520 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01799 - - - mnt:21410355 712.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma14g01799 Bma15g00177 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01010 Bma-Chr1:10299010 Bma14g01799 Bma-Chr14:38592848 1.57E-06 transposed
Bma02g01145 Bma-Chr2:53375641 Bma14g01799 Bma-Chr14:38592848 1.82E-83 transposed
Bma06g00817 Bma-Chr6:41784391 Bma14g01799 Bma-Chr14:38592848 4.49E-149 transposed
Bma07g00330 Bma-Chr7:4285203 Bma14g01799 Bma-Chr14:38592848 3.51E-09 transposed
Bma07g01300 Bma-Chr7:48601927 Bma14g01799 Bma-Chr14:38592848 2.07E-75 transposed
Bma11g00583 Bma-Chr11:8645291 Bma14g01799 Bma-Chr14:38592848 1.61E-07 transposed
Bma14g01799 Bma-Chr14:38592848 Bma15g00177 Bma-Chr15:1878430 3.20E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g677 . . . . . . Bma14g01799 Bma15g00177 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g00919 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008682 0 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01799 Bma_Chr14 FPKM 0.498197 0.208432 1.580588 1.185127 4.12373 3.392424 3.191078 2.98243 4.575229 4.496151