Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01825 ATGTCGAAACCCTGGGGAGGTGTCGGGGCTTGGGCTGCCGACTCCGAGCGCGCAGAGCAGGAGGAACTGGAGGCGGCGGCGGCAGCGGCAGCGGCAGCGGCAGCTTCTCAAGTGGAGAATGAGAACTTTCCGAGCCTCAAGGATGCGGCGAGGGCGAAGACAAAGAAGAAGAAGATGAGTTTGTCGGAGTTCACGAAGAGCACTTCTATGGCGTCCGGCTCCATCAGTGGGATTGGAGGGTATAAAGGCTTGACTGCGGAGGAGATGCTTCGTCTTCCTACCGGTCCGAAGGAGCGGTCGGCGGAGGAGATGCAAAATAGCCGCTATGGAGGTGGATTTTCATCGTATGGGCGTTCAGGTCCGACACAGGGTCGGAATCGGGACCGAGACGATGGCGATGGGTCTTGGGGAGGTGCAAGGAAATCCTATGGTGGATTTGGCGACGAACAGAGAGGTCCACCTTCCAGGGTGTCCGATTTCGATCAAACTTCTAGGGCGGACGAGGTCGAAAACTGGGCATCGACTAAGAAATCTCTTCCAGCATTTGAACCCGGTAGGCAAAACTGGCATGGATCACTTGATGGTGGTATGGGAGGAGTTTCTCGGGCTGACGAAAACGAAAATTGGGGAAGCGGGAAAAAATCTTTTCCCTCTAGATCCTCTACATTTGGTACAGGTTTTCGCGATTCAGGAGATTCTGATCGCTGGAATCGAAGTGTATCTCGTGAGAATGAGCGGGAGAGGCCTAGGTTGGTTTTGAATCCTCCAAAAGGCAATGCTGGTGTTAACTCTGAGGTGAATGAACCTCCAAAGACAAATAAACCGAATCCATTTGGTGCTGCAAGGCCGAGAGAGGAGGTTTTGGCTCAGAAGGGATTGGATTGGAAGAAGTTGGATTCGGAAATTGATGCAAAGAAAACAAGTAGGCCGACAAGTTCTCACTCCAGCAGGCCATCGAGTGCACAGTCAACCAGGTCGGAAAGCCAGGGTCTGCAGGGAATAGAAAATCTGTTGAAGCCAAGGCCAAAAGTTAACCCATTTGGAGATGCCAAGCCCAGGGAAGTTTTGCTAGAGGAGCAAGGCAAGGATTGGCGAAAGGTTGATGTTGAATTGGAGCATCGTGCAGTTCAGAGGCTGGAAACAGAAGAAGAAAAGTTGCTGAAAGAAGAACTAGATTATTTAAAGAAAGAACTCAATGATGAAGTTAAAGCCAAGGTGAAAAGGGAGTCACTGCAGGAAACTGCTGAAGATCAGCCAAGTCTACAAGATATTTATATTCTGAAAGAGAGAGAACTGGAGAAACTGATTTGTGATTTAGATGACAAAGTTCGCTTTGGGCAGAAGGCAATCGAAAGGCCAAGCTCTGGAACTGATAGAGCTGCTATCCTTGAGAGACCACCTTCTCAATCAGGAAAGGAGTCCAGAAACGCTGAGCTAATGGATAGACCTCGCTTTCACAGCAAAGGAGATGGGTGGTCAGGGCCTGCAGATGATAGAAGAGGAATTCAAGGTGACCGGAATAGAGTTTCTTTGGTCACCAGGGACTTTGAGAGGTGA 1557 50.03 MSKPWGGVGAWAADSERAEQEELEAAAAAAAAAAASQVENENFPSLKDAARAKTKKKKMSLSEFTKSTSMASGSISGIGGYKGLTAEEMLRLPTGPKERSAEEMQNSRYGGGFSSYGRSGPTQGRNRDRDDGDGSWGGARKSYGGFGDEQRGPPSRVSDFDQTSRADEVENWASTKKSLPAFEPGRQNWHGSLDGGMGGVSRADENENWGSGKKSFPSRSSTFGTGFRDSGDSDRWNRSVSRENERERPRLVLNPPKGNAGVNSEVNEPPKTNKPNPFGAARPREEVLAQKGLDWKKLDSEIDAKKTSRPTSSHSSRPSSAQSTRSESQGLQGIENLLKPRPKVNPFGDAKPREVLLEEQGKDWRKVDVELEHRAVQRLETEEEKLLKEELDYLKKELNDEVKAKVKRESLQETAEDQPSLQDIYILKERELEKLICDLDDKVRFGQKAIERPSSGTDRAAILERPPSQSGKESRNAELMDRPRFHSKGDGWSGPADDRRGIQGDRNRVSLVTRDFER 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 39176988 39179413 - Bma012604.1 Bma14g01825 95806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01825 518 MobiDBLite consensus disorder prediction 311 333 - -
Bma14g01825 518 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B1 1 518 - -
Bma14g01825 518 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 518 IPR010433 GO:0003743
Bma14g01825 518 MobiDBLite consensus disorder prediction 211 228 - -
Bma14g01825 518 Pfam Plant specific eukaryotic initiation factor 4B 1 508 IPR010433 GO:0003743
Bma14g01825 518 MobiDBLite consensus disorder prediction 450 518 - -
Bma14g01825 518 MobiDBLite consensus disorder prediction 1 24 - -
Bma14g01825 518 MobiDBLite consensus disorder prediction 231 252 - -
Bma14g01825 518 Coils Coil 369 389 - -
Bma14g01825 518 MobiDBLite consensus disorder prediction 475 518 - -
Bma14g01825 518 MobiDBLite consensus disorder prediction 51 354 - -
Bma14g01825 518 MobiDBLite consensus disorder prediction 107 122 - -
Bma14g01825 518 MobiDBLite consensus disorder prediction 287 310 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01825 - - - mnt:112092297 555.829
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma14g01825 Bma15g00222 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00596 Bma-Chr3:4935866 Bma14g01825 Bma-Chr14:39176988 3.18E-39 dispersed
Bma08g00764 Bma-Chr8:44659284 Bma14g01825 Bma-Chr14:39176988 1.17E-38 dispersed
Bma14g01825 Bma-Chr14:39176988 Bma15g00222 Bma-Chr15:2194033 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g628 . . . . . . Bma14g01825 Bma15g00222 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00846 . Bda07g01640 . . . . . . . . . Cma05g00048 . Car05g00036 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008333 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 0 1 1 0 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01825 Bma_Chr14 FPKM 4.573234 4.637876 3.062314 3.490788 20.696577 16.955734 17.20541 4.791531 3.809032 4.307923