Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01828 ATGTACCCAAGTCTCGGGGCACAACGCCTCCTATACCGAGCTCGCATCTCACATTATGTTAGAGCTGGTCTTATAGATCATGCAGTCAAAGTGTTCGACGAAATGACTGAATCAAACTGTCGTGTATTCAGGAAAGACTACAATCAGTTCATAGGCGTTCTGGTACGTCAATCACGTTTCGACTTAGCTGAAAAATATTATGCCAATATGATTCCGCTAGGTTTTTCTTTGACTCCATTTACCTATTCGAGGTTCATTTCTGGTTTATGTAAGGTTAAGAACTTTGGTCTCTTAGAGAAGCTGATTTCAGACATGGATTTTCTTGGATTTCTCCCCGATATTTGGGCTTTCAATATTTATTTGAATCTTTTATGCCGCGAAAAGCAAATAGAGTTGGCCGTACAAGTTTTTTATACCATGCTTGAGAGAGGAATGGAACCTGATGTTGTCACATATACTACAATGATTGATGGATTGTGCAAAGCTGGAAATTTTGACGTGGCAGTCGAATTCTGGCATTCTATGGTAAATAAGGGGCTTAGTCCAGATATCAAAGCTTGTACTGCTCTAGTTGTTGGGTTGTCTGATGGTGGGAAGGTTGATTTAGCATATGATCTTACAGTAGGCGAAATTAAGAATCAGATTAAGTTTAATAATTTAATATTCAATTCTCTTATTAATGGGTTTTGTAAAGGAGGTCGGATAGATAAGGCCTTAGCTATTAAGTCATTTATGAGAAGGAATGGTTGTGAACCCGATTTGGTTACTTACAATATATTGTTGAATTTTTGTTGTGATAGACTGATGTTGGAGCAGGCGGAGAAGTTGATGAAGAAGATGGAAAAAAGTGGGATAAAACCAGATGTATATAGCTATAATCAACTTCTCAAAGGTTTTTGCAAAGCGAACAGATTGGATAAGGCTTATATGTTGATGGTAAACATGATGGAGGCAAAAGATTTATGTGATGTTGTTTCTCATAATACTTTAATCGGAGGTTTTTGCAACGGTTTATTGACTAGAAAAGCGTACGAGCAGTTTGAGAAAATGGGTCGCAAGGGAATTCCTCCTGATGTTGTTACTTTCACCACTCTTGTGAGAGCATTTCTAATGGAAGGTAGTTCAGATAAAGTTATAAAACTTCTTCACCAGATGGAATTGATGAATGTGATGCCTGATCCTATATTCTACACAGCACTTCTTGATTACTTCTGTAAGACAGGGAAAATTGAGAAGGCTTATGGCACATTTCATGAGATGGTAGAGAAGGGAATCATTCCGGACGTAGTTTCATACAATGCTCTTATAAATGGTCTTTGCAAGGCGTCTAAGATGGACGAAGCCTTGAGTCTATATAAAGAAATGCAGGTGAAAGGATGTCATCCTGATGAAGTGACTTTCAAATTGATTATTAAAGGACTTATACAAGACAAGAGGGTTTCTGATGCTTGTCAAATTTGGGATGTGATGATGGAGAAGGGCTACACTCTTGATAGAAGTGTCTCTGAAACTCTTATTGATTCCATCCAGTCAGAGGATGTTCTTAGATGA 1551 37.98 MYPSLGAQRLLYRARISHYVRAGLIDHAVKVFDEMTESNCRVFRKDYNQFIGVLVRQSRFDLAEKYYANMIPLGFSLTPFTYSRFISGLCKVKNFGLLEKLISDMDFLGFLPDIWAFNIYLNLLCREKQIELAVQVFYTMLERGMEPDVVTYTTMIDGLCKAGNFDVAVEFWHSMVNKGLSPDIKACTALVVGLSDGGKVDLAYDLTVGEIKNQIKFNNLIFNSLINGFCKGGRIDKALAIKSFMRRNGCEPDLVTYNILLNFCCDRLMLEQAEKLMKKMEKSGIKPDVYSYNQLLKGFCKANRLDKAYMLMVNMMEAKDLCDVVSHNTLIGGFCNGLLTRKAYEQFEKMGRKGIPPDVVTFTTLVRAFLMEGSSDKVIKLLHQMELMNVMPDPIFYTALLDYFCKTGKIEKAYGTFHEMVEKGIIPDVVSYNALINGLCKASKMDEALSLYKEMQVKGCHPDEVTFKLIIKGLIQDKRVSDACQIWDVMMEKGYTLDRSVSETLIDSIQSEDVLR 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 39191545 39193095 + Bma012607.1 Bma14g01828 95809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01828 516 Pfam PPR repeat 215 245 IPR002885 -
Bma14g01828 516 Gene3D Tetratricopeptide repeat domain 8 101 IPR011990 GO:0005515
Bma14g01828 516 Gene3D Tetratricopeptide repeat domain 102 211 IPR011990 GO:0005515
Bma14g01828 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Bma14g01828 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Bma14g01828 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Bma14g01828 516 TIGRFAM PPR: pentatricopeptide repeat domain 150 184 IPR002885 -
Bma14g01828 516 TIGRFAM PPR: pentatricopeptide repeat domain 221 253 IPR002885 -
Bma14g01828 516 TIGRFAM PPR: pentatricopeptide repeat domain 116 149 IPR002885 -
Bma14g01828 516 TIGRFAM PPR: pentatricopeptide repeat domain 325 359 IPR002885 -
Bma14g01828 516 TIGRFAM PPR: pentatricopeptide repeat domain 465 498 IPR002885 -
Bma14g01828 516 TIGRFAM PPR: pentatricopeptide repeat domain 80 114 IPR002885 -
Bma14g01828 516 TIGRFAM PPR: pentatricopeptide repeat domain 12 41 IPR002885 -
Bma14g01828 516 TIGRFAM PPR: pentatricopeptide repeat domain 255 289 IPR002885 -
Bma14g01828 516 TIGRFAM PPR: pentatricopeptide repeat domain 430 464 IPR002885 -
Bma14g01828 516 TIGRFAM PPR: pentatricopeptide repeat domain 397 429 IPR002885 -
Bma14g01828 516 TIGRFAM PPR: pentatricopeptide repeat domain 360 393 IPR002885 -
Bma14g01828 516 TIGRFAM PPR: pentatricopeptide repeat domain 290 318 IPR002885 -
Bma14g01828 516 Pfam PPR repeat family 323 369 IPR002885 -
Bma14g01828 516 Pfam PPR repeat family 255 301 IPR002885 -
Bma14g01828 516 Pfam PPR repeat family 112 161 IPR002885 -
Bma14g01828 516 Pfam PPR repeat family 427 474 IPR002885 -
Bma14g01828 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Bma14g01828 516 Gene3D Tetratricopeptide repeat domain 409 515 IPR011990 GO:0005515
Bma14g01828 516 Gene3D Tetratricopeptide repeat domain 322 408 IPR011990 GO:0005515
Bma14g01828 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Bma14g01828 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Bma14g01828 516 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 4 513 - -
Bma14g01828 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Bma14g01828 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 8 42 IPR002885 -
Bma14g01828 516 Pfam PPR repeat 12 40 IPR002885 -
Bma14g01828 516 Pfam PPR repeat 397 425 IPR002885 -
Bma14g01828 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
Bma14g01828 516 Gene3D Tetratricopeptide repeat domain 212 321 IPR011990 GO:0005515
Bma14g01828 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 318 IPR002885 -
Bma14g01828 516 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 4 513 - -
Bma14g01828 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Bma14g01828 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01828 - - - jre:109013560 727.243
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00521 Bma-Chr11:6544031 Bma14g01828 Bma-Chr14:39191545 1.50E-07 dispersed
Bma14g01828 Bma-Chr14:39191545 Bma04g01001 Bma-Chr4:16271670 7.92E-19 dispersed
Bma14g01828 Bma-Chr14:39191545 Bma01g01368 Bma-Chr1:20698150 3.20E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g620 . . . . . . Bma14g01828 . . Cmo18g00756 . Cma18g00751 . Car18g00685 . Cpe09g00548 . Bhi07g01807 . . . . . . Cla05g02598 Cam05g2789 Cec05g2827 Cco05g2859 Clacu05g2791 Cmu05g2639 Cre05g2755 Cone13ag1092 . . . Lsi04g00608 Csa05g02277 Chy10g00843 Cme10g00587 . . Bda07g01644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006460 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 1 1 1 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01828 Bma_Chr14 FPKM 3.122721 4.342966 0.740519 0.978853 7.941422 6.620037 8.060795 3.086946 3.526788 2.522834