Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01830 ATGGGAGGAATATGGTCAAAGAATTCTGCTGATTCTTCGTCGTGGAATCATTATAGTTACCCTCATTACCTTCCACCATCGCCCCACTCCCAAAAAAGCCAATGTCGTATGCCTCAGCACCATCGCCAGACGACCCATCAACAGCAGAGAAATTTCGATCTGAAATACTCAAACATAGCTGATAATTACTGTTCCTTGGACGAGGTGACAGCCGCTCTTTCACAAGCGGGCCTCGAGTCTTCAAATCTAATCATTGGTATTGATTTCACAAAGAGCAATGAGTGGACAGGTTCAAGATCATTCAATAGACGCAGTTTACACCGAATAGGAGACACCCAAAATCCCTACGAGCAAGCCATATCAATTATTGGTAGAACTTTATCGGCTTTCGACGAGGATAACTTGATTCCTTGTTTCGGATTTGGGGATGCATCAACACATGATCAACATGTCTTTAGTTTCTATGAGAATGAAAGATACTGTAATGGATTTGAGGAAGTTTTAATGCGGTACAGAGAGATTGCTCCTAATCTTTGTCTAGCAGGACCTACCTCGTTTGCACCAATCATTGACATGGCCGTGACTATTGTGGAGCAAAGTGGCGGCCAGTACCATGTTCTGCTGTTAATTGCAGACGGGCAGGTAACTAGAAGCAATGACAAGCATCTTGGCCGGTTTAGCCCTCAAGAACAGAAGACTATCGATGCTATCGTACGAGCAAGTGAGTACCCTTTGTCGATAGTCTTAGTCGGAGTTGGAGACGGGCCTTGGGACATGATGAAGGAATTCGATGACAACATTCCTGCTCGAGCTTATGATAATTTCCAGTTTAAGGTTTTAAGAGAACATAATCTTACGTTAAATTCAGCTGTTATCACTCTCGTCTCTTTGTCTTATATGGCTGACACTTGCTGTGATTGCGGATCATCTCTCGAATTCTGCCCCATTTGCCGCTGCCTAATCCATCTCAGAATAAGACTTTATTAA 987 43.36 MGGIWSKNSADSSSWNHYSYPHYLPPSPHSQKSQCRMPQHHRQTTHQQQRNFDLKYSNIADNYCSLDEVTAALSQAGLESSNLIIGIDFTKSNEWTGSRSFNRRSLHRIGDTQNPYEQAISIIGRTLSAFDEDNLIPCFGFGDASTHDQHVFSFYENERYCNGFEEVLMRYREIAPNLCLAGPTSFAPIIDMAVTIVEQSGGQYHVLLLIADGQVTRSNDKHLGRFSPQEQKTIDAIVRASEYPLSIVLVGVGDGPWDMMKEFDDNIPARAYDNFQFKVLREHNLTLNSAVITLVSLSYMADTCCDCGSSLEFCPICRCLIHLRIRLY 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 39203687 39207841 + Bma012609.1 Bma14g01830 95811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01830 328 MobiDBLite consensus disorder prediction 26 49 - -
Bma14g01830 328 SUPERFAMILY vWA-like 81 264 IPR036465 -
Bma14g01830 328 Pfam Copine 105 285 IPR010734 -
Bma14g01830 328 PANTHER COPINE FAMILY PROTEIN 1 23 278 - -
Bma14g01830 328 PANTHER RING-FINGER PROTEIN 23 278 - -
Bma14g01830 328 SMART VWA_4 80 280 IPR002035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01830 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - rcu:8285472 407.527
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00518 Bma14g01830 CCT
Bma01g00518 Bma14g01830 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01361 Bma-Chr14:25332748 Bma14g01830 Bma-Chr14:39203687 1.92E-131 dispersed
Bma14g01830 Bma-Chr14:39203687 Bma01g00518 Bma-Chr1:4281411 4.35E-12 dispersed
Bma06g00290 Bma-Chr6:4132807 Bma14g01830 Bma-Chr14:39203687 6.47E-20 transposed
Bma13g00555 Bma-Chr13:11753997 Bma14g01830 Bma-Chr14:39203687 1.33E-133 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g611 Blo01g00803 . Bda01g01762 . . . Bma14g01830 . . Cmo18g00725 . Cma18g00733 . . . Cpe09g00556 . Bhi07g01827 . . . . . . Cla05g02613 Cam05g2801 Cec05g2837 Cco05g2869 Clacu05g2804 Cmu05g2652 Cre05g2769 Cone13ag1094 . . . Lsi04g00627 Csa05g02262 Chy10g00832 Cme10g00600 . . Bda07g01646 . . Bpe02g01936 Bma01g00518 . . Cmo04g02800 . . . . . . . . . . . . . . . . . . . . . . . Chy09g00375 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01830 Bma_Chr14 FPKM 32.05484 30.692051 49.59285 49.11108 177.318619 156.782104 158.628525 54.422386 59.17358 58.922749