Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01833 ATGGAGGAAAGTGGTGGTGTTCGTTTTCCGGGAAGTTTGGACCCGAGAGCGCAGGAGTTCCGGCCAAGAAACCCGGCCGGCCTCAACCCACTGCCGCACCATGTTTTTTATTCCTACGCTTCTCCTTATCCACCAATCAGTGAAGTTCACTTGTTGCCCTTCTACGATGGCGCCGGCTACCCTCAGTTTCAGTTACCTCCGCCGTACGTTACCCAAGTGGCCTCTCCCCCTCCGGTTCGTCCGCCTGCTCAGCCTCCTTTGGCCGCGACTCGGTCGCTTCTGCTTACCTCAGTGCCGAGTGATGTCAGTGAGTCGGCGGTGCGGAGGGAATTGGAAGTGTTCGGTGAGGTTCGAGCGGTGGAGATGGAGAGGGTAAACGACGGCGTCTTGACTGTTCATTTTTACGATCTGAGAAATGCGGAGATGGCGTTCAGAGAGATTAGAGAGCTGCACATGAACCAGCAAACCCACCTCCGCCACTATTACACCTCGTTAACGCTACGTAATTCTCCCTCGTCGCTTCCCCAGTCTGCTCCGCCGTCGCGCGGGCTGATTTCCGGCCGTGCAGTTTGGGCTCAGTTCGTTACTCCGGCGAGCAACGCTGTACCCGAGGGAAGAAATCAAGGTACCATTGTTGTATTCAATTTAGACTCCGACGTCTCCACCTCCAGTCTCAGAGAAATCTTCGAAGTTTTCGGCCCTGTGAAGGAATTGAGGGAGACGCCATTGAAGAAGAGCCAAAGATTTGTGGAATTTTTCGATACAAGAGACGCTGCAAGGGCTCTTAAAGAGATGAACGGAAAAGAAGTCGCCGGAAAGCCACTCCTCATTGAATTTAGTCGACCTGGCGGCCATAGCCGGAAGCTTTACAATGTCATCTCCTCCAATCCCACAACCTGCCCAAACTCAAACTCTCACTACCCCAATACTCCGAAATCATCTCCTCCGTCTCCTACTGCTATGCGTTATGCGTCGAAAAACTTCAGCCACCATGGTAAGAGTAGCTCCAGTGAAGCTCTAATGGCGTCTCTAAATTTGAGTGGCGACTCCGTTAGTAGAACTGAGGAGAGGCCGGAAATATCCGGTCCGCCATTGAACACCGTTGCAAAGAAAGTCATCAATCTGTCCACTGCAGTAACGAACAAACAATCGCCATCGCAGCCAAGTAGAAATAAAATGAGAAAAGGAAGACAACCAAAGAAATTCGACTCTCGATTTTCGATAAACGAAGATCAAATGGTTGAATCTGAATGTAGAGATTCAAGAACAACCGTGATGATAAAAAACATACCCAATAAGTACAGTCAAAAGTTGCTGCTAAATATGTTGGATAACCACTGTATTCACTGCAACGAGCAGATTGGCGAGGAAGAGGAGACACAGCCCTTGTCTTCCTATGATTTTGTCTACCTTCCAATTGATTTCAACAACAAGTGCAACGTGGGTTATGGGTTTGTGAACATGACGTCGCCGGAAGCTACATGGAGGCTGTACAAAGCCTTCCATTTTCAGCATTGGGAGGTGTTCAATTCCAGAAAAATCTGTCAAGTTACCTACGCTAGATTGCAGGGCTTGGAAGCTTTGAAAGAGCACTTCAAGAACTCCAAGTTTCCTTGCGAAATGGACCATTATTTACCGGTGGTCTTTTCACCCCCTCGCGATGGCAGACAATTAACGGAGCCTCTCCCCATTGCTGGCCAGAAGCCATTAATCGCCATTGGCGCTTCATCAGAAGGAGCGGCAGATGAGAACGACGAAGATATGGACGACGGTCAAGATACACCTGAAAACTTTTATTACAATCCCCCCGGCGACGATGGTTATGGAAATGAAGATGCTTACGTAGGGCTTCGGGCGGTGTAA 1863 49.49 MEESGGVRFPGSLDPRAQEFRPRNPAGLNPLPHHVFYSYASPYPPISEVHLLPFYDGAGYPQFQLPPPYVTQVASPPPVRPPAQPPLAATRSLLLTSVPSDVSESAVRRELEVFGEVRAVEMERVNDGVLTVHFYDLRNAEMAFREIRELHMNQQTHLRHYYTSLTLRNSPSSLPQSAPPSRGLISGRAVWAQFVTPASNAVPEGRNQGTIVVFNLDSDVSTSSLREIFEVFGPVKELRETPLKKSQRFVEFFDTRDAARALKEMNGKEVAGKPLLIEFSRPGGHSRKLYNVISSNPTTCPNSNSHYPNTPKSSPPSPTAMRYASKNFSHHGKSSSSEALMASLNLSGDSVSRTEERPEISGPPLNTVAKKVINLSTAVTNKQSPSQPSRNKMRKGRQPKKFDSRFSINEDQMVESECRDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGEEEETQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATWRLYKAFHFQHWEVFNSRKICQVTYARLQGLEALKEHFKNSKFPCEMDHYLPVVFSPPRDGRQLTEPLPIAGQKPLIAIGASSEGAADENDEDMDDGQDTPENFYYNPPGDDGYGNEDAYVGLRAV 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 39249713 39252259 - Bma012612.1 Bma14g01833 95814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01833 620 MobiDBLite consensus disorder prediction 1 25 - -
Bma14g01833 620 PANTHER RNA BINDING PROTEIN 29 595 - -
Bma14g01833 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 275 IPR000504 GO:0003723
Bma14g01833 620 Gene3D - 202 289 IPR012677 -
Bma14g01833 620 SMART rrm1_1 210 278 IPR000504 GO:0003723
Bma14g01833 620 SMART rrm1_1 92 159 IPR000504 GO:0003723
Bma14g01833 620 CDD RRM3_EAR1_like 422 524 IPR034458 -
Bma14g01833 620 Pfam RNA recognition motif 2 422 533 IPR007201 -
Bma14g01833 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 282 IPR000504 GO:0003723
Bma14g01833 620 MobiDBLite consensus disorder prediction 379 405 - -
Bma14g01833 620 SUPERFAMILY RNA-binding domain, RBD 209 502 IPR035979 GO:0003676
Bma14g01833 620 MobiDBLite consensus disorder prediction 294 336 - -
Bma14g01833 620 PANTHER TERMINAL EAR1-LIKE 1 29 595 - -
Bma14g01833 620 MobiDBLite consensus disorder prediction 575 611 - -
Bma14g01833 620 SUPERFAMILY RNA-binding domain, RBD 53 149 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01833 - - - zju:107428470 693.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00237 Bma-Chr2:2496105 Bma14g01833 Bma-Chr14:39249713 3.30E-32 dispersed
Bma03g00569 Bma-Chr3:4737625 Bma14g01833 Bma-Chr14:39249713 3.68E-44 dispersed
Bma11g00961 Bma-Chr11:42737671 Bma14g01833 Bma-Chr14:39249713 7.53E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g598 . . . . . . Bma14g01833 . . . . . . . Sed04g0552 . Cpe01g01579 Bhi07g01835 Tan04g0132 Cmetu10g1346 Lac13g0115 Hepe10g0058 . . Cla05g02618 Cam05g2805 Cec05g2841 Cco05g2873 Clacu05g2809 Cmu05g2657 Cre05g2773 . . . . Lsi04g00631 Csa05g02256 Chy10g00826 Cme10g00605 Blo06g00838 . Bda07g01649 . . . . . . . . Cma04g01791 Cma05g00053 Car04g01806 Car05g00041 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002936 2 2 1 1 1 1 3 1 1 2 2 1 3 2 2 3 1 0 3 1 2 2 2 2 2 2 3 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01833 Bma_Chr14 FPKM 0.754403 0.954467 5.129003 4.838352 7.602555 8.267121 8.113034 0.996881 1.48964 1.07798