Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01851 ATGGGCTCCATCTCCATCCAACCTGGAATTAACCGTGGAGGAACTTCTACTGCTCCACCTCTCAACGGCTCTTCTCTTTCTCCTTCTTCTTCCTCTTCCTCTCTTTCCACCTCCTCCCCTTCTGCTCCGTCCTACCTTGCCGACGCTTCTCTCGCCATCTCCTCCAGATCGGACACTCATCACTCCAGTCTATCAGGAGTCATCGCCGATTCCGTAAAAAAGAATACCCACAACCAGAAACAACGACCACAGCAATTGTCGATCGTACCGACGACGACGACGACGACGGCTAACGCCACGAAGAGATCCACCAAAGACCGTCACACGAAGGTCGATGGCCGCGGCCGGCGAATCAGGATGCCGGCGGCTTGTGCGTCTAGGGTTTTCCAATTGACCAGAGAATTAGGCCACAAGTCGGACGGTGAGACTATAGAGTGGCTTCTTCAGCAAGCGGAGCCTGCAATTATCGCTGCCACCGGGACAGGTACGATTCCGGCGAACTTCTCGTCTCTAAATGTCTCTCTTAGGAACAGCGGATCCACACTGTCGGCGCCGTCGTCGAAGTCTCCTCACTCATTCCACGGCGCTTTGGCTCTAGCTCACCACCCTCACTACGACGAAGGATTTGCTCACACTGCGCTGTTAGGATTCCACCACCATCATCAACAGCAGCAACAGCAACAGCAACATCAACATCACCACGCCAATCTCATGACAGCCAATCAAATCGCAGAAGCGCTACCAAGCAGCGATGCCGGCGAGAGTGGTAATGGCGCGGGAAATTCAGCCGAAAATTACATGAGAAAGCGATTCCGAGAAGATCTATTCAAAGAAGACACACAATCTCGGAACGAAAATACAGAATCGCCGAAGGCGTTCAAGAGCAGCTTACACATTCAGAAACAACAGCATGAAGAGGGGGAAGAACCTTCGAGTCTTCACCGGCCATCAAATGTTCTCCCGGCAACGGCCATGTGGGCAGTGGCGCCTGCTCCAAGCAGCGGCACCGGTAACGCGTTTTGGATGTTGCCTGTTTCAACTAGCGGCGGAGCCCCAAGTGTAACAGCAGGTACATCAGGCGTGTCACCGCCAGAAGCACAGATGTGGCCATTTCCAACGACAATTCCGATGGGAGGAAATACATTACAAGCTCCATTGCATTTCATGCCAAGATTCAACATGCCGGGAAGTATGGACTTCCAAGGAGGGAGAAGCAGTCCTCTGCAACTGGGGTCTATGCTAATGCAGCAAAATCATCCATCCCATCATCTGGGTCTGGGAATGTCGGAATCCAATCTGGGTATGCTAGCAGCTCTTAATGCCTACTCCAGAAGTAACCTTAATATGAATTCTGAACATCAAAGTCATCCATTGGAGCACCCTCCACACCAGCATCGAGCTGCAGAAAGCGAAGAAGACCCCAGCAATTCCCAATGA 1437 52.19 MGSISIQPGINRGGTSTAPPLNGSSLSPSSSSSSLSTSSPSAPSYLADASLAISSRSDTHHSSLSGVIADSVKKNTHNQKQRPQQLSIVPTTTTTTANATKRSTKDRHTKVDGRGRRIRMPAACASRVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNVSLRNSGSTLSAPSSKSPHSFHGALALAHHPHYDEGFAHTALLGFHHHHQQQQQQQQHQHHHANLMTANQIAEALPSSDAGESGNGAGNSAENYMRKRFREDLFKEDTQSRNENTESPKAFKSSLHIQKQQHEEGEEPSSLHRPSNVLPATAMWAVAPAPSSGTGNAFWMLPVSTSGGAPSVTAGTSGVSPPEAQMWPFPTTIPMGGNTLQAPLHFMPRFNMPGSMDFQGGRSSPLQLGSMLMQQNHPSHHLGLGMSESNLGMLAALNAYSRSNLNMNSEHQSHPLEHPPHQHRAAESEEDPSNSQ 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 39881354 39882790 + Bma012632.1 Bma14g01851 95832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01851 478 MobiDBLite consensus disorder prediction 298 312 - -
Bma14g01851 478 MobiDBLite consensus disorder prediction 276 317 - -
Bma14g01851 478 MobiDBLite consensus disorder prediction 74 100 - -
Bma14g01851 478 MobiDBLite consensus disorder prediction 74 112 - -
Bma14g01851 478 MobiDBLite consensus disorder prediction 456 472 - -
Bma14g01851 478 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 478 IPR005333 GO:0003700
Bma14g01851 478 MobiDBLite consensus disorder prediction 447 478 - -
Bma14g01851 478 MobiDBLite consensus disorder prediction 1 44 - -
Bma14g01851 478 Pfam TCP family transcription factor 103 241 IPR017887 -
Bma14g01851 478 ProSiteProfiles TCP domain profile. 104 158 IPR017887 -
Bma14g01851 478 PANTHER TRANSCRIPTION FACTOR TCP8 17 478 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01851 - - - jre:109002313 553.903
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00454 Bma-Chr3:3454189 Bma14g01851 Bma-Chr14:39881354 1.75E-38 dispersed
Bma08g00216 Bma-Chr8:2682222 Bma14g01851 Bma-Chr14:39881354 3.31E-46 dispersed
Bma12g00991 Bma-Chr12:41986190 Bma14g01851 Bma-Chr14:39881354 1.74E-33 dispersed
Bma12g00998 Bma-Chr12:42072358 Bma14g01851 Bma-Chr14:39881354 1.74E-33 dispersed
Bma14g01394 Bma-Chr14:26170313 Bma14g01851 Bma-Chr14:39881354 7.58E-35 dispersed
Bma14g01410 Bma-Chr14:26659192 Bma14g01851 Bma-Chr14:39881354 4.68E-35 dispersed
Bma14g01851 Bma-Chr14:39881354 Bma15g00272 Bma-Chr15:2657284 2.25E-99 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00844 . 35 261 TCP Transcription Factor Family AT5G23280 58.1 2.7e-58 222.2
Bma03g00454 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.7e-52 203.0
Bma14g01851 . 103 186 TCP Transcription Factor Family AT3G47620 88.1 2.0e-36 150.6
Bma13g00592 . 6 259 TCP Transcription Factor Family AT3G27010 58.1 7.6e-66 247.7
Bma14g01394 . 19 277 TCP Transcription Factor Family AT3G27010 54.8 1.8e-59 226.5
Bma14g01410 . 7 257 TCP Transcription Factor Family AT3G27010 55.3 5.8e-58 221.5
Bma08g00844 . 8 259 TCP Transcription Factor Family AT5G08330 53.8 4.7e-60 228.0
Bma03g00454 . 1 259 TCP Transcription Factor Family AT5G08330 51.2 8.0e-60 227.3
Bma08g00244 BCT,CCT 30 123 TCP Transcription Factor Family AT5G60970 78.9 5.8e-38 155.2
Bma01g01086 . 31 132 TCP Transcription Factor Family AT3G02150 78.8 1.4e-39 160.6
Bma03g01315 BCT,CCT,ECH 8 192 TCP Transcription Factor Family AT2G31070 54.0 7.9e-43 171.4
Bma08g00546 CCT,ECH 112 296 TCP Transcription Factor Family AT2G31070 50.5 1.5e-38 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010392 1 0 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58424 PF03634 TCP 9.80E-40 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01851 Bma_Chr14 FPKM 0.088839 0.0 3.407003 2.355028 0.310727 0.0 0.0 1.803075 1.307159 1.33401