Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01876 ATGTATTATCAGCTGGCAATGGCTTCGTCTCAGGACTCGTTGAAGGTCTTGGAGGATGATATACACCAGGCAAATACTCTAGCTGCTGCAATTCCAAGAACAAAGGGAGGTTCCCATCTGCAAATGAAGCTGGTGTACAATCACTGGGCGCCACTCTTTCTGTTTCTACTACAATGGGTGGATTGTTCTTGCACTTGTTTGCTTTCTAGATACCTAAATTTCTTTCACATACTTGTTTACAAGGTCATAGTTTATCTGATCTTTCGCTGTGTTCAGGTATACACAGACGGTCGATCAAACGTGCCGATGATCGGAAGGAAGGCAACTATTAGAGACTTCTATGCTGTTATATTGCCATCTCTTCAACGGCTTCGCAACAATTTAGAAGCAACAACAGACAATGCGAAAGGAGGGGAGTTGTGTGTGGAAAAATCTTCCAAGAAAAATCCCGGCGAAGAAGATGAATGCGGGATTTGCTTGGAGCCTTGTGCTAAGATTGTCTTGCCTAATTGCTGTCACTCCATGTGCATAAAATGCTATCGAAACTGGAGTAGACGGTCACAATCGTGCCCTTTCTGTCGGGGAGAAGAAAGAAAGGCTTTTACAAGAGAACTTACCGGTTTATGTAATCAGCTGAAGCCTCTTATTTATCAACATGAATTTCTGGGTGAAAATGGTGGGCAATCTATTGAGGATGACAGTGAAATGAGAGTTGGGCTCGTTGGGGAAAAGTTATCGGTCGGTGATACCTCATATCAGGGATTGATAAATGAGTGCTCTCAGTTTCTTAAGAGTGCTTTAGAGAAGCGGTTACAAACTGAGTCCACCATAGAGGAACTTCAGTCCATTATTCATAAAAAGGATCAGGAGATCAATGTTCTTCATGCAAAAGTTGCTGGATTTTCAGAATCAAATGATGTCTTTGGCTCATCTGTGGAGTCGATTCAGAAGCCTGTGGAGGTTGTAATGGATAGAATTTCATTTTCTCTTTCCCAGATATTTGATCAACAAGAGTTTATGGATTTTTCTTTTTCTGGAAAATTAAATCACGTTGAAAGATGCACGACTCAGTTAATTGAGCAGTATAACAAAATGCTTTCTGAAATTGATCTCCTCCGACAGTGTTTGTCTGGGGATAGGCAGTTGCAGGATTTAGAGGCAATTTTTTCTGCAGCTCGTGACGAGCTATTTGACCTCAAAGGTAAGGAAGAAGGCTTTGTAGAGAAATTAAGAAGTCTAGAAAATGACAACAGAATATTGATCGAACAGCTGGAAAATCACAGAGCACTAGTTGTGACGATGAAGACTGATATTGCAAAAACAAAGATGGAAGTTGAGCAAGAAAGGAATAAATTCAGTAGTACTAAAGAAAAGCTCGGTATGGCTGTGACAAAAGGCAAGGCATTAGTACAACAGCGAGATGCATTGAAGCAGTCATTGGCGGACAAAACACTTGAGCTTGAGAAATGTTTGTTCGAATTACAAGAGAAATCAACTGCTCTGGAGGCTGCTGAATTGAGCAAAAGAGAGTTGATCGAAAGCGAAACCTTAGTTGCATCACTGCAGGAGAACCTCTTTCAAAGAACTGAAGTTATTGAAAAATTTGAAGGAGTTTTGTCCCAAATTGATGCTCCCTCAGATATCGAGTCGATCGATATGGTAGAGAGACTCAGATTGCTTGTGGTTGAGAACAAAAGGCTCAAGGACATTTCCTTAGAATTACGCAAAGTTGAAGATGTTTTTTCTTTTGTTGATCTACCTGAAGTTTTTTCATCTTCTGATTTGAAATCTCGTGTTAGTTGGCTTAAGGAATCTTTTTTCCAGGCCAAAGATAAAATAATCATGTTACAAGATGAACTTGCTAGAACAAGGGAAGCAGGACATAAGGAGATCAACCAATTAACTGAATCGCTTTTAATGGAATTACAAGAGAAGAACTTTCTAAAGGTGGAGCTGGATGATCTAACCCTTGAGTATAAAGAGATTGGTGAAAAAGTGTGTCAGATTTTAAAGGAGAAGGATTGGATTGTCAAAATGTTGCTTGAAGTTTCTGGAGTTTTAGCTGAAGATAATAAGATTTCTGAACCTTCCTTTGCCGTTTCTGTTCTTGTTGATAGAAGCTTTCAGAAGATAAAAGAGCACATTAGCGCCCCTGTAGACTCCTCTGGTTTTGATGCGGAGTCATTTGAAAGAATTCAAAACCTCTTATATGTGAGGAATCTGGACTTGACGCTCCACGGTGACATTCTGGAGGAGAAGTTACTTGAATTGGATAATTGTTCGAATAAGTTAAGTGCGATGTCTCGGGAGCTCATGATTGTGAGTGAAGATAAAGAAGTTTTATTGAAAGATCTAGAAAGATCAGAAGAGAAATCTGCTGTCCTGAGGGAGAAGTTGTCCAAGGCAATCAAGAAAGGCAAGGGACTGGTTCAAGATCGTGAAAATATGAAGCGAATTTTGGAGGAGAAAAGCTCAGAAATCGAAAAGTTGAAGCATGAATTGGAGAGTCAAGAATCCATAGTTTCCAATGCCATGGACCAGATCAATAAATTGTCAGCTGATGCCGAGTGTATCCCGAAGTTGGAGGCTGATTTTGTTGCCATGAAAGATGAGCGAAGTCAATTCGAGCAGCTGTTATGGGAGAGCAATAACATGGTGCAGAATATCATCAAATCTCTTGATGATATTTTCGTTCCTGTTGATATAGTTTTTGAAGAGCCAATAGGAAAGGTGAAGTGGCTTGCAGGATACCTTAAGGAATGTCTTGAAGCCAGGAGTCATGCAGAGCAAGATTTAGCCAAAGTTAAGGATCACGCAGAAGATCTCACTTGTAAATTAGACGAAGCCTTAGATACAGTGAAATCATTGAAAGATGCTTTATCAGCTGCAGAGAGCAATATTTCTCAAATTTCCAAGGAAAAGAGGGAAGTTGAAGCTCAAAAATTAGAAGTTGAAAAAAAGTTGCAGGAAGGAATAGATGACGCAAATTTATTGTCTGAAAAATTTAGTGAAGCTTGTTCTGCTAGAAATGTACTCGAAGAGGTATTGTCAGCAGTAGAAAATAAACTAACACTTCTTATCAACGAGAAAGAAGAGGTTCAAGTCGGTAGACTCGCTGCAGAAATGGAGCTTGGAAAAGCGAGAGAGGAGGTGGACGCTCAAACCAGTAAACTTGAAGAGACTCATAAAACCATTAAGTTACTAAAAGATGAACTCTCTCAGTTGAAGAAAAATATTGCTGTACTCACTGAACAACACAATGATGCACAATCTGGTAGAACCCATTTAGAGATTGAGTTGAAGAAACTTCAGGAAGAAGCTGGATCCCAGGTCAGTCAGCTCGACGAAGCCTCTGCAACAATAAAAACACTGGAAGATTCACTATACAAGGCCAAGAGTAATATTTCAGGGCTAGAAGATTCTAGGGAAAAGGCTGAAGAGGAAATATTCACACTGAATTCCAAATTAAATGCATGCATGGAGGAGTTAGCTGGTACTAATGGCAACGTAAAAAGCTGGTCTATAGAGTTATTTGGGTGCCTCAATGATCTTCAAGAGCTTATGAGAGATAACATGCTAATGTCTAGTGTGACGCAATGTTTTGAAAAAAAACTAAAAAGCCTGAAAGAGATGGAACTTATTCTTAAAGATATAAGAGAGAGTTGTGCAGACAGTGGTTTGCAAGATCTGCAAAGACCCGGCATCATGGAGGTTTCGTCTGTTACAAAACCTTTCTCAGATGGTGATATAAAGCTCATAGATATTGAAATGGACAATGATGACATCGTTGCAGCAGATTCTGGTGCCAACATATCAGTGTCTCTGAGAAAGACTCTAGAAGGATTTCATTTAAGAAACAAAGCACTCGCATATACGTTTGAAGATTTCTCTTCTTTTATAGATGAGCTTATTGGTGTTCTCTTACAAAATCTAAGGGAAGCTAGAGAGGACGTTAAATTGGTGTCTCAAAAAATGGTATCTTTGAAACAGATAGCACTGGATTTTGAAAGTTTTAAACAGGAACAAGAGAACATTAAACAGGAACAAGAAAACATGACGGCCAGGTTAGAGAGTGAAGTTGCATCTCTGCTGTCTGCTTGCATGGAAGCCGCGACAGATCTGCAGTTTGAAGTCACGAATGGCCTAATGAAACTCCACTCTATTCCCGAGCTTGAGAAATTGAAATATAACATGTCATTAGAAACTAGAGGAGCTGATTGCGATTCTGAAATTGAGAGCATCTCGAGGTTTTCAGGCGGTAAACATGTCAAAGAAGTAGAAAAGTTACTGTTTTTATCTAGAAGAGCTAATATTTCTGCTAAACAATTTGAGAGCACGAGTAATATTGCAGCTGCTATCATTGAAGATTTGCAGAATCAGTTGCATATTTGCAATATTTCTTCCGAGAATGCCCTCAAAGAAAGGAAAATTGATCATGACAGGATTTCTGAGCTGGAGTCTGGTGTAGAAGCTTTAAAATGTTCCTGCGATGAACTTAGTGTTCAACTTGTGGATTATCAAGCTACAAAGGAAAAGTTAAGGGAGAAAGAGGAAGAAGCTTTGTCACTGCATAATACTGCGTTGATGAAAGAGCAAGAGGCGAAAGATATTCTCTTGTCTGCATCTGAAATACAGACCTTATTTGACAAAATTAGAGGGATTGAAGTTTCTGTGCATGAGTCAGATGTCGAAGAGCTGGGTCTTTATGGTTCAACTGAATCGAAGAAACTTTTATGCATAATCGACAGTGTGAATCAATTGCAGAGTGAAGTAAAATTATTATCCAAAGACAATGAAGTTCTGCGGTCAAGTTTGTCAACCCAAATTCTTGAAACTGAGCATCTAAAGCAGGAAGTCGACAAAGCAACTAGAGATAAACTTGGGTTTGAAAAAATGACTAAGGACATGCCAGAGCTCACTATGGCCTTAGTGAAAATTGTTAATTTGTTAGGTGGTGATTATAATGGAGAGCCAAACTCAGACGGGATGAAGGGGCTTTTGATGGCAGTTGAAAAACAAGCTATGGCGATCCTTTTGGAATCTGAAAACTCAAAATCCAAAACTGAGGAACTTCTGGCCAAGTTGATTAGCAGCCAGAAGGTTGTGAACGAATTGTCAACCAAAGTGTCGTCACTTGAAGATTCTCTTGTTCGAGGGACGATACCTCAGTCAGAGATTGTCCAGGAAAGGAGCATCTTTGAAGCACCATCATTTCCTGCTGCGTCAGAGTCAGAGATATCTGAAATTGAGGATGTGGGATCTGTTGGAAATAATGCAATATCCTCTGTCCCCTCATCTTCTGCCCATGCACGAACTATGCGGAAGGGATCAGCTGACCATCTCGCAATCGATATAGATACAGAATCTGATCGTTTGATCAAAAACAGGGAGGAAGTTGATGAGGCAAAAGGTCATGTTTTCAAGTCTCTGAACACGTCGGGTCTCATTCCAACACCAGGGAAACTTATTGCAGACCGAATTGATGGAATATGGGTATCGGGTGGTCGAGTTCTGATGAGTCGGCCAAGGGCGAGGCTTGGCCTTCTTGCTTATTGGATTGTCTTGCATATGTGGCTGCTAGTATCCGTTTTCTAA 5595 40.0 MYYQLAMASSQDSLKVLEDDIHQANTLAAAIPRTKGGSHLQMKLVYNHWAPLFLFLLQWVDCSCTCLLSRYLNFFHILVYKVIVYLIFRCVQVYTDGRSNVPMIGRKATIRDFYAVILPSLQRLRNNLEATTDNAKGGELCVEKSSKKNPGEEDECGICLEPCAKIVLPNCCHSMCIKCYRNWSRRSQSCPFCRGEERKAFTRELTGLCNQLKPLIYQHEFLGENGGQSIEDDSEMRVGLVGEKLSVGDTSYQGLINECSQFLKSALEKRLQTESTIEELQSIIHKKDQEINVLHAKVAGFSESNDVFGSSVESIQKPVEVVMDRISFSLSQIFDQQEFMDFSFSGKLNHVERCTTQLIEQYNKMLSEIDLLRQCLSGDRQLQDLEAIFSAARDELFDLKGKEEGFVEKLRSLENDNRILIEQLENHRALVVTMKTDIAKTKMEVEQERNKFSSTKEKLGMAVTKGKALVQQRDALKQSLADKTLELEKCLFELQEKSTALEAAELSKRELIESETLVASLQENLFQRTEVIEKFEGVLSQIDAPSDIESIDMVERLRLLVVENKRLKDISLELRKVEDVFSFVDLPEVFSSSDLKSRVSWLKESFFQAKDKIIMLQDELARTREAGHKEINQLTESLLMELQEKNFLKVELDDLTLEYKEIGEKVCQILKEKDWIVKMLLEVSGVLAEDNKISEPSFAVSVLVDRSFQKIKEHISAPVDSSGFDAESFERIQNLLYVRNLDLTLHGDILEEKLLELDNCSNKLSAMSRELMIVSEDKEVLLKDLERSEEKSAVLREKLSKAIKKGKGLVQDRENMKRILEEKSSEIEKLKHELESQESIVSNAMDQINKLSADAECIPKLEADFVAMKDERSQFEQLLWESNNMVQNIIKSLDDIFVPVDIVFEEPIGKVKWLAGYLKECLEARSHAEQDLAKVKDHAEDLTCKLDEALDTVKSLKDALSAAESNISQISKEKREVEAQKLEVEKKLQEGIDDANLLSEKFSEACSARNVLEEVLSAVENKLTLLINEKEEVQVGRLAAEMELGKAREEVDAQTSKLEETHKTIKLLKDELSQLKKNIAVLTEQHNDAQSGRTHLEIELKKLQEEAGSQVSQLDEASATIKTLEDSLYKAKSNISGLEDSREKAEEEIFTLNSKLNACMEELAGTNGNVKSWSIELFGCLNDLQELMRDNMLMSSVTQCFEKKLKSLKEMELILKDIRESCADSGLQDLQRPGIMEVSSVTKPFSDGDIKLIDIEMDNDDIVAADSGANISVSLRKTLEGFHLRNKALAYTFEDFSSFIDELIGVLLQNLREAREDVKLVSQKMVSLKQIALDFESFKQEQENIKQEQENMTARLESEVASLLSACMEAATDLQFEVTNGLMKLHSIPELEKLKYNMSLETRGADCDSEIESISRFSGGKHVKEVEKLLFLSRRANISAKQFESTSNIAAAIIEDLQNQLHICNISSENALKERKIDHDRISELESGVEALKCSCDELSVQLVDYQATKEKLREKEEEALSLHNTALMKEQEAKDILLSASEIQTLFDKIRGIEVSVHESDVEELGLYGSTESKKLLCIIDSVNQLQSEVKLLSKDNEVLRSSLSTQILETEHLKQEVDKATRDKLGFEKMTKDMPELTMALVKIVNLLGGDYNGEPNSDGMKGLLMAVEKQAMAILLESENSKSKTEELLAKLISSQKVVNELSTKVSSLEDSLVRGTIPQSEIVQERSIFEAPSFPAASESEISEIEDVGSVGNNAISSVPSSSAHARTMRKGSADHLAIDIDTESDRLIKNREEVDEAKGHVFKSLNTSGLIPTPGKLIADRIDGIWVSGGRVLMSRPRARLGLLAYWIVLHMWLLVSVF 1864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 40167770 40178010 - Bma012660.1 Bma14g01876 95857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01876 1864 ProSiteProfiles Zinc finger RING-type profile. 156 194 IPR001841 -
Bma14g01876 1864 SMART ring_2 156 193 IPR001841 -
Bma14g01876 1864 Coils Coil 1051 1162 - -
Bma14g01876 1864 Coils Coil 438 458 - -
Bma14g01876 1864 Coils Coil 1496 1526 - -
Bma14g01876 1864 SUPERFAMILY Tropomyosin 987 1176 - -
Bma14g01876 1864 Coils Coil 263 283 - -
Bma14g01876 1864 Coils Coil 645 665 - -
Bma14g01876 1864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 203 IPR013083 -
Bma14g01876 1864 Coils Coil 410 430 - -
Bma14g01876 1864 Coils Coil 932 990 - -
Bma14g01876 1864 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Bma14g01876 1864 PANTHER - 1087 1147 - -
Bma14g01876 1864 PANTHER - 196 982 - -
Bma14g01876 1864 PANTHER - 1149 1863 - -
Bma14g01876 1864 PANTHER - 1032 1089 - -
Bma14g01876 1864 PANTHER BNAA09G28150D PROTEIN 1149 1863 - -
Bma14g01876 1864 PANTHER BNAA09G28150D PROTEIN 196 982 - -
Bma14g01876 1864 Coils Coil 813 854 - -
Bma14g01876 1864 Coils Coil 1311 1366 - -
Bma14g01876 1864 Coils Coil 778 805 - -
Bma14g01876 1864 Coils Coil 1584 1604 - -
Bma14g01876 1864 SUPERFAMILY RING/U-box 149 196 - -
Bma14g01876 1864 Coils Coil 1009 1029 - -
Bma14g01876 1864 PANTHER BNAA09G28150D PROTEIN 1087 1147 - -
Bma14g01876 1864 PANTHER BNAA09G28150D PROTEIN 1032 1089 - -
Bma14g01876 1864 Coils Coil 750 770 - -
Bma14g01876 1864 Gene3D - 1042 1225 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01876 - - - pavi:110772686 1524.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01315 Bma-Chr1:17983932 Bma14g01876 Bma-Chr14:40167770 1.04E-07 dispersed
Bma14g01876 Bma-Chr14:40167770 Bma14g01877 Bma-Chr14:40180133 3.45E-40 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1116 . . . . . Bpe10g00772 Bma14g01876 . . Cmo18g00712 . Cma18g00725 . Car18g00672 . Cpe09g00564 Cpe01g01588 Bhi07g01852 . . . . . . . . . . . . . . . . . Lsi04g00641 . . Cme10g00618 . . . . . . . . . . . . . Car04g01817 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004326 1 1 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 5 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01876 Bma_Chr14 FPKM 0.0 0.189006 8.535532 8.128715 0.0 0.0 0.0 48.745991 49.52755 50.592712