Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01877 ATGTTGTCTTCTCAAATTCTCTGCCAACAACAAAGCGTTCCTTTTTCTGCCTTTGGCTCCTACCTAATAAATAAACCTCCCCCTTTCCCTTTTCCCACTTTTCCTTTGCTCTGTCAGATTTCTGGAAAGGAAAGAATGTGGCAGATTCTGGCCCCCAAGCCTTGTTTCACAGAATCCATCAAAGCCCTTGAAGCTGATGTTCATCATGCTAACAGCTTAGCAGCTTCTCTCCCGAGTGATTGTAGAGGAAAATGCATTCGGATGAAATTGAATTACAGTCCCTTTGCTCCTCTTTTTCTGCATTTGATAGAATGGATGAATTTCAGCTGTACGGACGGTCTCCCCAGCTTTTTAGGCCTTCTTAATGTACTCGTCTTCAAGGTGTTTATCTCATCTGTTTCTGTTTATGCAGTATTTCTATTTTCCTTTTTGCAGTTTCGTGTTGGTGGAATCCCATCGAAAGGAAGGAAAGCAACCTTAAGAGAGTTTTATGGTTTGTCCTCAACTCCCATGGCTTCTTTATTCGTTCATGGAATCTCCACAATCTCATCCACAATCCCACATTGGGAAATTCTTGCAGCTGTCATCTACCCTTCACTTAGACAACTTGAAGGAGAGGTTATGGAGATGGAAAACTCTAAACAAAGACGCCAATTTACAGATGTTTTGAAGGAAAAGAGAGTAGAAGCACAAAGGAAGCTTTCTAGTGAAATTCTTGAAAGAGAGGAGGAATGCGGAATATGCTTGGAAATCTGCACAAAAATTGTACTGCCGAATTGCGGCCATTCCATGTGTATTAGCTGCTTCCACGACTGGAACGGAAGATCTCAGTCTTGCCCCTTCTGCAGGGGCAGCCTAAAGCGAATAACCCCGACAGATTTATGGATTCTCCCTACTACTTCTGATATCGTGGATACAGAGACTGTCGTGAAGGAGAATCTATTGCACTTCTACCTCTATATCGACAATCTCCCTGTTCTTATGCCAGAGACACGTGTTTGTACGCACGATTTCATGCTCTGA 1023 42.82 MLSSQILCQQQSVPFSAFGSYLINKPPPFPFPTFPLLCQISGKERMWQILAPKPCFTESIKALEADVHHANSLAASLPSDCRGKCIRMKLNYSPFAPLFLHLIEWMNFSCTDGLPSFLGLLNVLVFKVFISSVSVYAVFLFSFLQFRVGGIPSKGRKATLREFYGLSSTPMASLFVHGISTISSTIPHWEILAAVIYPSLRQLEGEVMEMENSKQRRQFTDVLKEKRVEAQRKLSSEILEREEECGICLEICTKIVLPNCGHSMCISCFHDWNGRSQSCPFCRGSLKRITPTDLWILPTTSDIVDTETVVKENLLHFYLYIDNLPVLMPETRVCTHDFML 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 40180133 40181387 + Bma012661.1 Bma14g01877 95858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01877 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 305 IPR013083 -
Bma14g01877 340 PANTHER RING FINGER PROTEIN 41, 151 49 165 - -
Bma14g01877 340 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 49 165 - -
Bma14g01877 340 Pfam Ring finger domain 244 283 IPR001841 -
Bma14g01877 340 ProSiteProfiles Zinc finger RING-type profile. 245 283 IPR001841 -
Bma14g01877 340 SUPERFAMILY RING/U-box 234 290 - -
Bma14g01877 340 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 174 340 - -
Bma14g01877 340 PANTHER RING FINGER PROTEIN 41, 151 174 340 - -
Bma14g01877 340 SMART ring_2 245 282 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01877 - - - qsu:112034218 321.242
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00396 Bma-Chr11:4312989 Bma14g01877 Bma-Chr14:40180133 9.04E-74 dispersed
Bma14g01876 Bma-Chr14:40167770 Bma14g01877 Bma-Chr14:40180133 3.45E-40 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1118 . . . . . . Bma14g01877 . . . . . . . . . Cpe01g01591 Bhi07g01857 . . . . . . Cla05g02628 Cam05g2819 Cec05g2854 Cco05g2887 Clacu05g2822 Cmu05g2670 Cre05g2787 Cone13ag1107 Cone19ag1095 Cone8ag0715 . Lsi04g00643 . . Cme10g00620 . . . . . . . . . . . Cma04g01807 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008688 0 4 2 1 1 1 0 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01877 Bma_Chr14 FPKM 10.459627 9.389858 14.014479 14.103188 11.281785 11.836134 10.839478 35.025063 35.090759 36.270988