Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01883 ATGGCTTCCACCGGAACATCTTCTCCCTCTTTACAAACAAATTACAGAGAGATATCAAGCTTCCCAATAACTCAACTATGCAAAACACATAAAACCCATCTTTCATTTTCATTTCTTCTGCCATTGATGAAAGCTCCACTCCTGAAATCTTCAAGCACTGCGAGGTACAATGAGGTAGTCATGAAGGAAGAAGAAGATGAGGAAATGGGTAAAATTAGGAGGCTCCAAAATGGGTCTGACGTTAGAGGGGTGGCATTGGAAGGGGAAAAGGGAAGAACTGTGGATCTTACTCCTCCAGCTGTGGAAGCCATAGCTGAGAGCTTTGGAGAGTGGGTTATAAAGGGGTTGGAAAAAGAGGACGGACCTTATGTTGAAAAAGTTAGGGTTTCGCTTGGAAAGGATCCAAGAATTTCAGGACCAAGTTTGAGTGTAGCCATTTTTGAAGGTCTTGATCGTTCTGGTTGTTTGGTGTTTGATATGGGTCTTGCTACTACGCCTGCTTGTTTCATGAGTACAATACTTCCACCATTTGCTTTTGAAGCTTCGATAATGATGACGGCTTCTCATTTGCCGTATACAAGGAATGGACTGAAGTTCTTCACAAAGAGAGGAGGGCTAACGTCAAGTGAGGTTGAGGAAATATGTGAGAATGCAGCAAGAAAGTATGTTAATCGGATGACCAAAGTCTCGACTTCCATGAAAGTTCTTCCTACCAAAGTTGATTTCATGAGCGTTTATGCAAACCATCTCAGAGAAATTATCAAAGAAAAGGTCAACCACCCTTTGGACTATGATACTCCTCTTCAAGGATTTGAGATAATAGTGAACGCTGGAAATGGGTCAGGAGGGTTCTTCACATGGAACGTCTTAGACAAGCTTGGTGCTGACACATTTGGCTCTCTCTACCTCAACCCGGACGGAATGTTTCCGAACCACATTCCCAACCCAGAGGACAAGACTGCCATGGCTGTCACCCGAGAAGCAGTTCTCAAAAACACGGCCGATCTTGGCATTGTTTTTGACACAGATGTTGACCGCAGTGGTGTCGTTGATAACAAAGGAAACCCCATTAATGGTGACAAACTCATAGCTCTTATGGCTGCAATTGTATTGAGAGAACACCCTGGAACCACCATTGTCACCGACGCTCGAACAAGCATGGCTCTTACCAAGTTCATCACTGAAAGAGGCGGCCGACATTGTTTGTATCGGGTCGGTTACAGAAATGTTATTGATAAAGGAGTTCAGTTGAATAAAGATGGAGTAGAGACTCATCTCATGATGGAAACTTCAGGACATGGTGCTCTTAAAGAAAATTACTTCCTTGATGATGGGGCATACATGGTGGTAAAAATCATCATCGAAATGGTGAGAATGAGGCTTGCAGGTTCAGAAGAAGGGGTGGGGAGTCTAATAAAAGATTTAGAAGAGCCATTGGAGGCAGTAGAACTAAGGATGAACATCATCTCAGAACCTAGATTTGCAAAGGCAAAGGCGGTCGAGGCAATCGAGACATTTCGATACTACATCGAGGAAGGGAAACTCAAAGGATGGGAGTTGGATTCGTGTGGAGATTGTTGGGTTAGCGAAGGATGTCTCGTAGACTCAAACGACGATCCCGCAGCCGTTGATGCTCACATGTACCGAGCAAAAGTTACAGACGAGAAGCATGGACAACATGGTTGGGTTCATCTTAGACAAAGCATACACAATCCTAATATTGCAGTTAACTTTCAATCAACTGTCCCTGGGGGTTGTCAAGCAATGACGAGAGTTCTTAGAGATAGGTATGCACTCATTTCTTTTGCATTTCAATGCATTTATCATAGAGGTATCAATCGAGTGAGAAAGGCTATAAGTTAA 1863 43.42 MASTGTSSPSLQTNYREISSFPITQLCKTHKTHLSFSFLLPLMKAPLLKSSSTARYNEVVMKEEEDEEMGKIRRLQNGSDVRGVALEGEKGRTVDLTPPAVEAIAESFGEWVIKGLEKEDGPYVEKVRVSLGKDPRISGPSLSVAIFEGLDRSGCLVFDMGLATTPACFMSTILPPFAFEASIMMTASHLPYTRNGLKFFTKRGGLTSSEVEEICENAARKYVNRMTKVSTSMKVLPTKVDFMSVYANHLREIIKEKVNHPLDYDTPLQGFEIIVNAGNGSGGFFTWNVLDKLGADTFGSLYLNPDGMFPNHIPNPEDKTAMAVTREAVLKNTADLGIVFDTDVDRSGVVDNKGNPINGDKLIALMAAIVLREHPGTTIVTDARTSMALTKFITERGGRHCLYRVGYRNVIDKGVQLNKDGVETHLMMETSGHGALKENYFLDDGAYMVVKIIIEMVRMRLAGSEEGVGSLIKDLEEPLEAVELRMNIISEPRFAKAKAVEAIETFRYYIEEGKLKGWELDSCGDCWVSEGCLVDSNDDPAAVDAHMYRAKVTDEKHGQHGWVHLRQSIHNPNIAVNFQSTVPGGCQAMTRVLRDRYALISFAFQCIYHRGINRVRKAIS 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 40303541 40313236 + Bma012668.1 Bma14g01883 95864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01883 620 Gene3D - 76 233 - -
Bma14g01883 620 PRINTS Phosphoglucomutase/phosphomannomutase family signature 334 349 IPR005841 GO:0005975|GO:0016868
Bma14g01883 620 PRINTS Phosphoglucomutase/phosphomannomutase family signature 270 289 IPR005841 GO:0005975|GO:0016868
Bma14g01883 620 PRINTS Phosphoglucomutase/phosphomannomutase family signature 305 318 IPR005841 GO:0005975|GO:0016868
Bma14g01883 620 PRINTS Phosphoglucomutase/phosphomannomutase family signature 181 195 IPR005841 GO:0005975|GO:0016868
Bma14g01883 620 SUPERFAMILY Phosphoglucomutase, first 3 domains 358 459 IPR016055 GO:0005975|GO:0016868
Bma14g01883 620 Gene3D - 272 350 - -
Bma14g01883 620 SUPERFAMILY Phosphoglucomutase, first 3 domains 79 254 IPR016055 GO:0005975|GO:0016868
Bma14g01883 620 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 247 354 IPR005845 GO:0005975
Bma14g01883 620 PANTHER PHOSPHOHEXOSE MUTASE 15 601 - -
Bma14g01883 620 PANTHER OS06G0476200 PROTEIN 15 601 - -
Bma14g01883 620 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 358 457 IPR005846 GO:0005975|GO:0016868
Bma14g01883 620 CDD PMM_PGM 75 595 - -
Bma14g01883 620 SUPERFAMILY Phosphoglucomutase, first 3 domains 245 356 IPR016055 GO:0005975|GO:0016868
Bma14g01883 620 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 74 221 IPR005844 GO:0005975|GO:0016868
Bma14g01883 620 Gene3D - 351 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01883 - - - rcu:8262532 964.526
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00341 Bma-Chr3:2541303 Bma14g01883 Bma-Chr14:40303541 2.24E-139 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g450 . . . . . . Bma14g01883 . . . . . . . Sed01g2847 . . Bhi07g00357 Tan04g1549 Cmetu10g0494 . Hepe01g0551 . . Cla07g00577 Cam07g0604 Cec07g0674 Cco07g0644 Clacu07g0608 Cmu07g0641 Cre07g0980 Cone13ag0751 . . . Lsi04g01125 . Chy10g00233 Cme10g01586 . Blo11g00979 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009666 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01883 Bma_Chr14 FPKM 24.943869 26.051704 29.789501 26.944361 30.021814 29.113226 32.717731 10.710372 9.074311 11.393485