Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01890 ATGAAGTTTTGGAAAAGAGCCACCGGAGCTCTTAAAGACCAAAACAGCATATGGGCAGCGAACCTGTCCAGGAGAACTCCGTACCGTCATCCGGACCTGGAGGCGCTGATAATCAAAGCGACCAGCCACGACGACACCATGGTTGACTACAAGAGCGCTCGAAGAGTGTTCCAATGGATTCGAACGTCGCCCATTTATGTAAGGCCTCTCGCGTGGGCCCTGACCAATCGAATGGAGAAAACCAGAAGTTGGGTGGTGGCTCTGAAGGGTTTGATGCTCATCCATGGTGTTTTCTGCTGCAAATACCCGTCTGTTCAGAAAATCGGAAGGCTGCCATTTGATCTCTCGAATTTCAGCGACGGCCATTCCACTTTCAACAGAACGTGGGGATACAATGTGTTCGTTCGAAAGTACTACACTTACTTAGATCACAAGTCTGCATTCTTATCCATGGACGTGAAGAAACAGAATTCCAGCATCAAGACAAATCAACAGGAGAAACTGGAATTGATTGAGGAGATCGAAAAGTTACAAAAATGGCAGACCATGCTCGATATGCTCCTCCAAGTAACACCACAAGACAATGCGATGAAAAAAGGAGTGAGTTTAATCATAGAGGCCATGAATAACTTAGTAATCGAGATTTTCGACATCTACAGCAAAATCTGCAGCGGAATTGCCAAAGTTTTGTTAAGAATATACGCATCGCCATTGAAGGGGGAAGCAGCTATGGCTCTTAGTATCATCCAAAAGGCAGCAAAGCAGGTTGAAGATCTCTCCGTCTACCTCGAGGTTTGCAGAGAGATGGGGGTTCTTAACGCATCAGAAATCCCGAAACTTGACAAGATTCCGGAAGAAGATATTCGAGATTTGGAAAGGATAATCAATGGCGCCTCGAGTCAAATGGTTGCAGAAGAAGACGATAAAGAGAAGGAACAAGTGAGAGAGAAAGCCATGGTGTTGGTGGGGGAAAGAGGGATTCAAAGCTAG 990 45.86 MKFWKRATGALKDQNSIWAANLSRRTPYRHPDLEALIIKATSHDDTMVDYKSARRVFQWIRTSPIYVRPLAWALTNRMEKTRSWVVALKGLMLIHGVFCCKYPSVQKIGRLPFDLSNFSDGHSTFNRTWGYNVFVRKYYTYLDHKSAFLSMDVKKQNSSIKTNQQEKLELIEEIEKLQKWQTMLDMLLQVTPQDNAMKKGVSLIIEAMNNLVIEIFDIYSKICSGIAKVLLRIYASPLKGEAAMALSIIQKAAKQVEDLSVYLEVCREMGVLNASEIPKLDKIPEEDIRDLERIINGASSQMVAEEDDKEKEQVREKAMVLVGERGIQS 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 40410243 40411309 - Bma012676.1 Bma14g01890 95871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01890 329 ProSiteProfiles ENTH domain profile. 25 156 IPR013809 -
Bma14g01890 329 CDD ANTH_N_AP180_plant 33 148 - -
Bma14g01890 329 SUPERFAMILY GAT-like domain 168 297 - -
Bma14g01890 329 Gene3D ANTH domain 154 314 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Bma14g01890 329 Pfam ANTH domain 32 296 IPR011417 GO:0005543
Bma14g01890 329 SUPERFAMILY ENTH/VHS domain 32 149 IPR008942 -
Bma14g01890 329 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 316 IPR045192 GO:0048268|GO:0072583
Bma14g01890 329 Coils Coil 288 308 - -
Bma14g01890 329 Gene3D - 4 153 IPR008942 -
Bma14g01890 329 PANTHER OS08G0467300 PROTEIN 1 316 - -
Bma14g01890 329 SMART enth_2 31 157 IPR013809 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01890 - - - csv:101214877 432.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01890 Bma-Chr14:40410243 Bma03g01311 Bma-Chr3:25870032 9.46E-30 dispersed
Bma14g01890 Bma-Chr14:40410243 Bma02g00022 Bma-Chr2:291101 1.21E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g553 . . . . . . Bma14g01890 . . . . Cma04g00026 . Car04g00035 . . . Bhi07g00107 . . . . . . . . . . . . . . . . . . . . . . Blo11g00959 Bda07g01710 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00988 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009008 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01890 Bma_Chr14 FPKM 167.430389 165.32724 72.055496 73.076797 115.295021 143.527451 118.309547 102.510536 111.330284 88.88131