Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01892 ATGGCTGGCCTTGAAGAACTAAGAAAGAAGCTTGCACCATTATTTGATGCTGAAAAGGGTCTTTCTTTGGATTCATCTTTGGACCCTTCCGGTTCCTACACATTTTCAGATGGTGGAGCTGTTAACTTGTTGAGCAGATCATATGGAGTATACAATATTAACGAGTTTGGATTGCAAAAGTGCTCCTCTTGGCCTGCGGATGATACTGATCATAGTGAAAAGACATACCGATGTTCTTCGCATGAGATGAGAATATTTGGAGCAATCGGTAGTGGTGCTAGTAGTGTTGTGCAGAGAGCTATCCATATTCCCAGTCATAGAATTTTGGCTCTGAAAAAGATCAATATTTTTGAAAAGGATAAAAGGCAACAGCTTCTTACAGAGATAAGGACACTATGTGAAGCGCCATGTTACCAGGGTCTTGTAGAATTCCATGGAGCGTTTTATACTCCTGACTCTGGACAAATCAGTATAGCTTTGGAGTACATGGATGGAGGCTCGTTGGCAGACATATTACGTATGAAAAGGAAAATACCAGAGCCTGTCCTTTCTTCAATGTTCCAAAAGATTCTCCAGGGACTGAGGTACTTGCATGGCGTTAGATATTTAGTCCACAGAGATATAAAGCCAGCTAATTTGCTCATAAATCTCAAGGGTGAGCCAAAGATAACAGATTTTGGTATAAGTGCGGGATTAGAGAATTCAATGGCGATGTGCGCGACATTTGTTGGGACTGTTACATACATGTCACCTGAACGGATTCGAAATGACAATTATTCCTATCCTGCTGACATCTGGAGCCTTGGACTTGCTCTCTTTGAGTGTGGTACTGGAGAATTCCCATATACTGCTACTGAAGGTCCAGTAAATCTCATGTTGCAGATTTTGGATGACCCGTCACCATCGCCACCAAACCACAGCTTTTCACCGGAGTTTTGCTCGTTTGTTGATTCTTGTTTGCAAAAGAATGCAGACGCTAGACCCACAGCCGAACAGTTGCTTGCACATCCATTTATCACAAAGTACGAGGATGCTCAAGTAGACTTGGCAGATTTTGTAAGAAGTGTGTTTGACCCGACACAGAGGTTGAAGGACTTGGCAGATATGCTGGCAATTCATTATTACTTGCTCTTTGATGGACCTGATGACGTTTGGCATCACGCCCGAACCTTTTACGATGAACGATCAAATTTCAGTTTCGCGGAGAAGATCCACGTAGACCCAAATGACATTTTCGAAACTCTGTCAAATATTCGAAGCACATTAGCGGGTGATTGGCCTCCTGAAAAGCTAGTGCATGTCGTTGAAAAGCTCCAGTGTCGAGCTCACGGAGCGGACGGAGTTGCTATTCGAGTATCCGGATCCTTTATCATTGGGAACCAGTTTCTAGTGTGTGGAGATGGAGTTCAAGTGGAGGGCTTACCCCATTTTAAAGATCTGGCCATCGATCTCGGCTCTCGCAGAATGGGGATGTTCCGTGAGCAGTTTATTATGGAGCCGAGCAGTGTGATTGGTCGGTACGTTATTTCGAAACAAGAGCTGTATATAACCCATCAGTAA 1560 43.65 MAGLEELRKKLAPLFDAEKGLSLDSSLDPSGSYTFSDGGAVNLLSRSYGVYNINEFGLQKCSSWPADDTDHSEKTYRCSSHEMRIFGAIGSGASSVVQRAIHIPSHRILALKKINIFEKDKRQQLLTEIRTLCEAPCYQGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRMKRKIPEPVLSSMFQKILQGLRYLHGVRYLVHRDIKPANLLINLKGEPKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNDNYSYPADIWSLGLALFECGTGEFPYTATEGPVNLMLQILDDPSPSPPNHSFSPEFCSFVDSCLQKNADARPTAEQLLAHPFITKYEDAQVDLADFVRSVFDPTQRLKDLADMLAIHYYLLFDGPDDVWHHARTFYDERSNFSFAEKIHVDPNDIFETLSNIRSTLAGDWPPEKLVHVVEKLQCRAHGADGVAIRVSGSFIIGNQFLVCGDGVQVEGLPHFKDLAIDLGSRRMGMFREQFIMEPSSVIGRYVISKQELYITHQ 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 40447577 40451159 + Bma012678.1 Bma14g01892 95873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01892 519 Gene3D Phosphorylase Kinase; domain 1 59 164 - -
Bma14g01892 519 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma14g01892 519 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 518 - -
Bma14g01892 519 CDD PKc_MAPKK_plant_like 84 343 - -
Bma14g01892 519 PANTHER - 2 518 - -
Bma14g01892 519 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Bma14g01892 519 SUPERFAMILY Protein kinase-like (PK-like) 85 355 IPR011009 -
Bma14g01892 519 Gene3D Transferase(Phosphotransferase) domain 1 165 363 - -
Bma14g01892 519 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma14g01892 519 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Bma14g01892 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Bma14g01892 519 Gene3D - 364 516 - -
Bma14g01892 519 SUPERFAMILY NTF2-like 364 515 IPR032710 -
Bma14g01892 519 SMART serkin_6 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01892 K20607 MKK3; mitogen-activated protein kinase kinase 3 [EC:2.7.12.2] - csin:114272195 889.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00589 Bma-Chr11:8789921 Bma14g01892 Bma-Chr14:40447577 1.30E-50 dispersed
Bma14g01892 Bma-Chr14:40447577 Bma14g01928 Bma-Chr14:41144676 0 dispersed
Bma14g01892 Bma-Chr14:40447577 Bma01g00841 Bma-Chr1:7951419 1.35E-34 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g00881 . 56 384 MAP Kinase Kinase Gene Family AT4G26070 61.1 1.4e-118 422.9
Bma01g00211 . 26 374 MAP Kinase Kinase Gene Family AT4G26070 52.8 1.7e-100 362.8
Bma11g00589 . 27 266 MAP Kinase Kinase Gene Family AT4G26070 70.8 6.9e-97 350.9
Bma06g00881 . 38 357 MAP Kinase Kinase Gene Family AT4G29810 62.0 2.3e-116 415.6
Bma11g00589 . 1 266 MAP Kinase Kinase Gene Family AT4G29810 70.9 4.1e-110 394.8
Bma01g00211 . 10 348 MAP Kinase Kinase Gene Family AT4G29810 55.0 1.6e-101 366.3
Bma14g01892 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 77.4 1.8e-226 781.9
Bma14g01928 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 77.4 1.8e-226 781.9
Bma10g00703 . 1 333 MAP Kinase Kinase Gene Family AT1G51660 67.6 2.9e-133 471.9
Bma10g00703 . 1 333 MAP Kinase Kinase Gene Family AT3G21220 66.7 7.0e-129 457.2
Bma01g00211 . 1 378 MAP Kinase Kinase Gene Family AT5G56580 79.4 2.8e-165 578.2
Bma06g00881 . 39 372 MAP Kinase Kinase Gene Family AT5G56580 58.3 2.3e-111 399.1
Bma11g00589 . 16 266 MAP Kinase Kinase Gene Family AT5G56580 61.9 1.4e-87 320.1
Bma10g00703 . 34 315 MAP Kinase Kinase Gene Family AT1G73500 50.2 5.9e-79 291.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66918 PF00069 Pkinase 2.30E-59 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01892 Bma_Chr14 FPKM 155.329041 158.872742 110.460541 106.152313 166.60762 189.295258 162.02034 117.647789 128.811768 116.458153