Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01897 ATGGTGATGTTTAATATTACGAGGAAGGTGACCGCGCCAATTGATGGACAAAAGCCCGGCACTTCTGGTCTCCGGAAGAAGGTTAAAGTGTTTATCCAACCTAATTACCTGGAAAATTTCGTCCAAGCTACATTCAATGCTCTTACAGAAGAGAAAGTTAGAGGTGCTACACTTGTTGTTTCTGGTGATGGTCGTTATTATTCAAAGGATGCGATTCAGGGTGCATTTGGCTGCATTTTTTTTTTCTATATTTGCAATTTTGTTGCAACAAGGACGTCAAATTATCTTTTACTTTCCCTGTCAAATTGTCAGATTATTGTGAAGATGTCAGCTGCCAATGGAGTTAGACGTGTTTGGATTGGTCAAAATGGATTGCTTTCCACTCCAGCTGTCTCAGCAGTAATACGTGAAAGGACTGGAATAGACGGATCCAGAGCATCAGGCGCATTTATTTTGACAGCAAGTCATAATCCAGGTGGTCCCCATGAGGATTTTGGTATTAAATACAACATGGAAAATGGTGGGCCTGCTCCTGAGTCAATCACTGACAAGATATATGAGAATACAAAATCAATACAGGAGTACTTAATTGCTGAGGATATGCCTGATGTGAATATCTCTGAAATTGGAGCAACAAGTTTTGGTGGACCTGAGGGACAATTCGATGTGGAAGTGTTTGATTCAGCAAGTGACTACGTGAAGTTGATGAAGTCAATTTTTGATTTTGATGCTATTCACAAGTTGCTATCCTCGCCAAAATTCACATTCTGCTATGATGCTTTGCATGGAGTTGCGGGAGCTTATGCAAAACGTATTTTTGTTGAAGAGCTTGGTGCACAAGAAAGCTCATTACTGAACTGTGTACCGAAGGAGGATTTTGGGGGAGGGCATCCTGACCCCAATTTGACTTATGCGAAGGGATTGGTAGCTCGTATGGGTTTGAGTAAATCAAACTTTGAAGAGGAACCTCCAGAATTCGGTGCCGCTGCTGATGGTGATGCAGATCGTAATATGGTCCTCGGCAAAAGGTTTTTTGTTACCCCGTCTGACTCTGTTGCTATAATTGCTGCAAATGCTGTTGAAGCGATACCATATTTCTCGTCTGGCTTGAAAGGAGTTGCCAGGAGTATGCCAACTTCAGCTGCCTTAGATGTTGTGGCAAAACACTTAAATCTGAAGTTTTTTGAGGTACCAACTGGATGGAAGTTTTTTGGCAACTTAATGGATGCAGGAATGTGTTCAGTTTGTGGCGAAGAGAGCTTTGGAACTGGATCTGATCATATTCGAGAGAAAGATGGAATATGGGCAGTTTTGGCATGGCTGTCAATACTTTATTACGAAAATAAGGAAAACCTCGGAGGAGAAAAGCTTGTGACTGTTGAGGACATAGTGCGCCAGCATTGGGAAATCTTTGGTCGCCACTACTACACCAGATATGACTATGAGAATGTTGACGCAGGAGGAGCTAAGGAACTTATGGCTAATTTGGTCCAATTGCAATCTTCCCTCTCCGGAGTTAATGAAATAATCAAGGAAATACGGTCAGATGTGTCCAATGTGGTCCATGCTGATGAATTTGAATACAAAGATCCTGTTGATGGTTCCATCTCAAAGCACCAGGGTGTTCGGTATTTGTTTGAGGACGGCTCGCGATTGGTTTTCAGGCTCTCGGGAACTGGCTCGGAGGGTGCTACCATTCGGCTCTACATTGAGCAGTATGAGAAGGATCCATCAAAAATTGGTAGAGATTCTCAAGAAGCTCTTGCTCCACTGGTGGAAGTTGCTTTGAAACTTTCTAAGATGCAAGAATTCACCGGACGATCCTGCCCCCACTGTCATTACATAAGACTTCCAACCTAA 1860 42.74 MVMFNITRKVTAPIDGQKPGTSGLRKKVKVFIQPNYLENFVQATFNALTEEKVRGATLVVSGDGRYYSKDAIQGAFGCIFFFYICNFVATRTSNYLLLSLSNCQIIVKMSAANGVRRVWIGQNGLLSTPAVSAVIRERTGIDGSRASGAFILTASHNPGGPHEDFGIKYNMENGGPAPESITDKIYENTKSIQEYLIAEDMPDVNISEIGATSFGGPEGQFDVEVFDSASDYVKLMKSIFDFDAIHKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCVPKEDFGGGHPDPNLTYAKGLVARMGLSKSNFEEEPPEFGAAADGDADRNMVLGKRFFVTPSDSVAIIAANAVEAIPYFSSGLKGVARSMPTSAALDVVAKHLNLKFFEVPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGIWAVLAWLSILYYENKENLGGEKLVTVEDIVRQHWEIFGRHYYTRYDYENVDAGGAKELMANLVQLQSSLSGVNEIIKEIRSDVSNVVHADEFEYKDPVDGSISKHQGVRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKIGRDSQEALAPLVEVALKLSKMQEFTGRSCPHCHYIRLPT 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 40563767 40577923 - Bma012683.2 Bma14g01897 95878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01897 619 Gene3D - 345 443 - -
Bma14g01897 619 PANTHER BNAA09G30060D PROTEIN 101 145 - -
Bma14g01897 619 PANTHER BNAA09G30060D PROTEIN 3 73 - -
Bma14g01897 619 PANTHER BNAA09G30060D PROTEIN 145 611 - -
Bma14g01897 619 SUPERFAMILY Phosphoglucomutase, first 3 domains 332 478 IPR016055 GO:0005975|GO:0016868
Bma14g01897 619 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 231 340 IPR005845 GO:0005975
Bma14g01897 619 PRINTS Phosphoglucomutase/phosphomannomutase family signature 148 162 IPR005841 GO:0005975|GO:0016868
Bma14g01897 619 PRINTS Phosphoglucomutase/phosphomannomutase family signature 324 339 IPR005841 GO:0005975|GO:0016868
Bma14g01897 619 PRINTS Phosphoglucomutase/phosphomannomutase family signature 253 272 IPR005841 GO:0005975|GO:0016868
Bma14g01897 619 PRINTS Phosphoglucomutase/phosphomannomutase family signature 289 302 IPR005841 GO:0005975|GO:0016868
Bma14g01897 619 SUPERFAMILY Phosphoglucomutase, first 3 domains 3 75 IPR016055 GO:0005975|GO:0016868
Bma14g01897 619 SUPERFAMILY Phosphoglucomutase, first 3 domains 99 260 IPR016055 GO:0005975|GO:0016868
Bma14g01897 619 SUPERFAMILY Phosphoglucomutase, C-terminal domain 473 611 IPR036900 GO:0016868|GO:0071704
Bma14g01897 619 Gene3D - 239 344 - -
Bma14g01897 619 CDD PGM1 11 610 - -
Bma14g01897 619 Gene3D - 454 613 - -
Bma14g01897 619 Gene3D - 90 238 - -
Bma14g01897 619 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 348 469 IPR005846 GO:0005975|GO:0016868
Bma14g01897 619 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 101 145 IPR045244 GO:0004614|GO:0005975
Bma14g01897 619 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 3 73 IPR045244 GO:0004614|GO:0005975
Bma14g01897 619 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 149 158 IPR016066 GO:0000287
Bma14g01897 619 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 145 611 IPR045244 GO:0004614|GO:0005975
Bma14g01897 619 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 17 73 IPR005844 GO:0005975|GO:0016868
Bma14g01897 619 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 103 195 IPR005844 GO:0005975|GO:0016868
Bma14g01897 619 SUPERFAMILY Phosphoglucomutase, first 3 domains 230 345 IPR016055 GO:0005975|GO:0016868
Bma14g01897 619 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 523 575 IPR005843 GO:0016868|GO:0071704
Bma14g01897 619 Gene3D - 6 84 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01897 K01835 pgm; phosphoglucomutase [EC:5.4.2.2] - pvy:116130053 1028.08
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g464 . . . . . . Bma14g01897 . . . . . . . . . Cpe01g01839 . . . . . . . . . . . . . . . . Cone6ag0384 Cone9ag0411 . Csa05g02011 . . Blo06g01007 Blo11g00973 . . . . . . . Cmo04g02216 Cmo15g01007 Cma04g02117 Cma15g00965 Car04g02059 Car15g00912 Cpe13g00359 . Bhi12g00924 . . . . . . Cla01g00622 Cam01g0650 Cec01g0643 Cco01g0668 Clacu01g0638 Cmu01g0612 Cre09g1890 Lsi09g00672 . Chy09g00838 Cme09g01370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005872 2 2 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01897 Bma_Chr14 FPKM 6.575438 7.575483 6.553602 6.385302 7.349399 5.798997 6.630307 9.614872 9.155464 9.773116