Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01906 ATGGCAATTCAGAACTTTTCGCTTGCCGTCATACTCCACAAATTTCAGGACGACGGCGAGGTCCTTCTGGTTAAGCAATCGCTCCCACCCAAGTACGCCAACGATGAGTACGATTCCTACGAATATCCTCCTGGTGTTATACTTGTACCTCTTAGAAGTAGGACGGCTAAACCATTTCATACAACAAACTTGGTTGTATTTGCTCCGGACAATAATGTAGCAGCTGATGACCATAATAGTGACCAGTTTTCTGCTTCAGGGGATGCATTAATTGTTGATCCCGGATGTCGATCTGAATCTCATGATGAGCTGATAAAAATGATTGCTGCCTTACCGAGAAAGTTAATTGTCTTTGTAACACATCATCACCGTGATCATGTTGATGGTCTTTCAATAATCCAAAAGTACAATCCAGATGCTACTTTAGTAGCGCACGAAAATACCATGCGTCGCATTGGAAAAGATGATTGGGCTCTGAGATACATTGCAGTTTCTGGTAATGAGGACGGACATACAGATGGTCACATGGGATTGCTACACGTCCGGACTCATTCACTAATTGTTGGTGACCATTGCGTGGGTCAAGGAAGTGCTATTCTGGACGTTACTTCGGGCGGAAATATGACTGACTATTTTCAAACCACTTACAAATTTATGGACATCGCCCCTCATGTTTTGATCCCCATGCACGGGAGAATCAATTTATGGCCAAAGCACATGCTTTGCGGATATCTCAAGAATCGCAGAAGCAGAGAAACTGCAATCTTGAAAGCAATAGAAGATGGGGCAAAATCACTGTTTGAGATTGTTTCAATTGTATATTCTGATGTTGATCGTAAATACTGGATTCCGGCATCATCAAATGTCAGGCTTCATGTAGATCATCTTGCACAGCAACACAAACTACCAAAGGTACCATCATCATTTACTCTTGGTCCGTATTTACCTTTAAACACAGGTTTCTACCTTGTTTTCTCACTCTCACATTTTTTCTTCAATTGGTTCTGA 1008 41.87 MAIQNFSLAVILHKFQDDGEVLLVKQSLPPKYANDEYDSYEYPPGVILVPLRSRTAKPFHTTNLVVFAPDNNVAADDHNSDQFSASGDALIVDPGCRSESHDELIKMIAALPRKLIVFVTHHHRDHVDGLSIIQKYNPDATLVAHENTMRRIGKDDWALRYIAVSGNEDGHTDGHMGLLHVRTHSLIVGDHCVGQGSAILDVTSGGNMTDYFQTTYKFMDIAPHVLIPMHGRINLWPKHMLCGYLKNRRSRETAILKAIEDGAKSLFEIVSIVYSDVDRKYWIPASSNVRLHVDHLAQQHKLPKVPSSFTLGPYLPLNTGFYLVFSLSHFFFNWF 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 40756036 40762728 + Bma012693.2 Bma14g01906 95887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01906 335 Gene3D - 169 239 IPR036866 -
Bma14g01906 335 Gene3D - 80 168 IPR036866 -
Bma14g01906 335 PANTHER ENDORIBONUCLEASE LACTB2 59 305 - -
Bma14g01906 335 Pfam Beta-lactamase associated winged helix domain 268 301 IPR041516 -
Bma14g01906 335 SUPERFAMILY Metallo-hydrolase/oxidoreductase 75 303 IPR036866 -
Bma14g01906 335 PANTHER ENDORIBONUCLEASE LACTB2 59 305 - -
Bma14g01906 335 SMART Lactamase_B_5a 77 230 IPR001279 -
Bma14g01906 335 Gene3D - 240 309 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01906 - - - pvy:116105951 428.328
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g337 . . . . . . Bma14g01906 . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0814 Cone19ag0821 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016256 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 7
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01906 Bma_Chr14 FPKM 11.390476 13.073787 13.259522 12.369499 11.900941 9.34163 11.038483 12.373207 13.02143 13.664988