Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma14g01916 | ATGGAAAATTTTCAGGGTCTTCTTAAAATTAGGGTCAAGAAAGGAATCAATCTCGCCGTTCGTGATATCAGAACCCGCAGCAGTGATCCATACGTCGTTGTTTCAATGGGTCAACAGAGAATGAAGACCCGTGTGGTGAAGAAAAACTGCAATCCGGTTTGGAATGACGATTTCACTCTTTCCATTTCAAATCTCAACACTCCAATAACCCTAACAGTATTTGACAAAGACAGGTTCACAGGAGATGACAAAATGGGCAATGCAGAGATTGACATTAAACCCTACATAGAGTGTCTTTCAATGGGGTTGAAGGATCTGCCCAAGGGTTGTGTCGTTAAAAGAATTCAGCCAGACCAGACGAACTGGCTCTCCGACGAGAGCACGTTTGTTTGGGACGACGGAAAAATTGTTCAAGAAATGCCGCTCAGGTTGAAGAATGTGGAGTGTGGAGAAGTTGTGATTCAAATTGAATTGATCGTCGGCCCCGGATCTAGACCTAATCGGGGAATTTGA | 513 | 43.86 | MENFQGLLKIRVKKGINLAVRDIRTRSSDPYVVVSMGQQRMKTRVVKKNCNPVWNDDFTLSISNLNTPITLTVFDKDRFTGDDKMGNAEIDIKPYIECLSMGLKDLPKGCVVKRIQPDQTNWLSDESTFVWDDGKIVQEMPLRLKNVECGEVVIQIELIVGPGSRPNRGI | 170 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 40896233 | 40897381 | - | Bma012704.1 | Bma14g01916 | 95897 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma14g01916 | 170 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 6 | 127 | IPR035892 | - | |
| Bma14g01916 | 170 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 163 | IPR044562 | - | |
| Bma14g01916 | 170 | ProSiteProfiles | C2 domain profile. | 1 | 108 | IPR000008 | - | |
| Bma14g01916 | 170 | PRINTS | C2 domain signature | 24 | 36 | IPR000008 | - | |
| Bma14g01916 | 170 | PRINTS | C2 domain signature | 48 | 61 | IPR000008 | - | |
| Bma14g01916 | 170 | PRINTS | C2 domain signature | 69 | 77 | IPR000008 | - | |
| Bma14g01916 | 170 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 10 | 1 | 163 | - | - | |
| Bma14g01916 | 170 | SMART | C2_3c | 7 | 104 | IPR000008 | - | |
| Bma14g01916 | 170 | CDD | C2_ArfGAP | 6 | 150 | - | - | |
| Bma14g01916 | 170 | Pfam | C2 domain | 7 | 94 | IPR000008 | - | |
| Bma14g01916 | 170 | Gene3D | C2 domain | 2 | 168 | IPR035892 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma14g01888 | Bma-Chr14:40383250 | Bma14g01916 | Bma-Chr14:40896233 | 1.36E-120 | transposed | |
| Bma14g01916 | Bma-Chr14:40896233 | Bma15g00044 | Bma-Chr15:614208 | 1.65E-101 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma14g01916 | - | - | zju:107429323 | 243.432 |