Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01918 ATGGGGAGGACAATTTGGGTCCATGGCTTTCCTTCTAATTCCCATACTGAAGAAGTTAAATCATTCCTAGAGCAATATACAGGTGATGGAACTGTGTATGCTATAAAAATTAGACTACCCAAGGGTGGGGGTCCCAGATCTTATGCTATTGTCCAATTTACCAATGTCAGAGAAGCCGAGATAATCATAAGATTGGCTAGTCGGCGCCTTCTTTATGGGACTTCTTATTTGAAAGTTAAAGAAGTGGAGCATGATATCATCCCCAAGCCAAGAGCTTACCTCCATAGTTTGCCAAATGTAACATTGTTCTTCGGCTGTCAGATTTCTAATGAAAAGTTCTTTGTTTTATGGGGAGAGACTAACGTTTCTGTGAACATGGGGTTTCATATGCGAAAATTGGATTTTCTTCTTTCCCATAAATCCAAGGATTACAAGTTTGTGCTTTCCTATGAGAACATTTGGCAGATCAAACTCCGTCAGCCGCGCGGTAGAGCTGCAAAATATCTTCTATTTCAGTTATATGGTGCTCCTCGATTATTTCGGAAAGATGCACCTTCTAATGAAGATATATTTGAAAGTCCAGTGTTCAACTATTTTAGAGACGGACATGATGATCAATGGGTACGAACCACTGATTTTACTCCATTTTGCTCAATAGGGCAGTCGTCTGCATTATGCTTAAAGCTCGATCGTGATGTTGAACTCCCAAATCTTAAAGAAAACTTTGCTTATTACGAACAAAACAATGAGCCATTTATATTGGAGACTGGTAAATCTTATTCTTGCGATTCAAATCTTGTTCCTATAGTTGGTCCTCATACCAGTATGGACTTGCCATTCGAGTTAATATTTAAAATTAACTTGTTGGTTCAAAATGGGTGTCTTCCTGGGCCAGCACTTGATCAGAATTTTTATCGTTTGGTTGATCCAAGAAGAATCAATTTCACATTTGTAGAACATGCTTTAGATAATCTTTATCATTTGAAAGAATGCTGCTATGAACCTTCGAGTTGGCTCACCAAACAGTATAGCAAATATCGAAAGCATCCTCCAAAGTCACCTTCTATATCACTAGATAGCGGGCTGGTTTATGTACGCAGGGTCCAAATAACACCTTGTAAAGTGTACTTCTCTGGCCCTGAAGTTAATATGTCCAATCGTGTTTTGCGTAAATACCCCGGTGATATTGATAACTTCCTTCGTATATCCTTTGTTGATGAGGAATGGGACAAATTGCGCTCTGCAGATTTATCTCCTCGTACATCACTTGCAAATGAGGATAGGAAAACTGATGTCTACAAAAGGATTCTTTCTATTCTCAGAAATGGATTGGAAGTTGGAGGTAAACAATTTGAATTTCTTGCATTTTCGTCCAGTCAGTTACGAGAAAACTCTCTGTGGATGTTTTCTTCTCGAACTGAGCTGACTGCAGAGGAAATTAGAAACGGGATGGGTGATTTTTCTCGCATAAGAAATGTTGCTAAGTACGCAGCTCGTCTGGGCCAATCCTTCAGTTCATCAACAGAGTCACTTACCGTCGAAAGGCATGAAATGGAACTCATTCCTGATATAGAAGTACGTCATGATGAAATCAACTATGTGTTTTCTGATGGGATTGGGAAAATATCCATAGATTTTTCTAAAAAAGTTGCTGCAAAGTGTGGTATTAGAGGAATTACTCCTTCTGCCTTCCAGATCCGATATGGTGGCTATAAAGGTGTTGTTGCTGTTGATCCAAATTTGTCACTGAAATTATCATTGAGAAAGAGCATGTGCAAATTTGAATCAACAAGCACAAAACTTGATATCTTGGCATTCACCAAATATCAACCTTGTGTTCTAAATAGGCAGTTGATTACTCTCTTGTCTACGCTTGGAGTTAAGGATTGTGTTTTTGAGACAAAACAGAGGGAAGCTGTAGATCAGCTGAATGCTATATTAACAGATCCATTGAGGGCAGAGGAAGCTTTAGAGTCGATGTCTCCCGGAGAAAATACTGAAATTTTGAAGAAAATGCTCTCATGTGGCTACAAACCTAATGTTGAACCTTTCCTCTCAATGATGCTACAAACTTTCCGAGCATCAAAGTTGTTAGAATTAAGGACTAAAACTAGAATCTATGTTCCAAATGGAAGAGCAATGATGGGATGTCTGGATGAAACTCGAACATTGGAATATGGTCAGGTCTTTGTTCAATTCTCTGACACTAGACACATGAACTCATACAATAATGACATTGGGAGAGAAGTGTCCAAGAGATTTATTGTTGAGGGAAAGGTCGTCGTTGCAAAAAATCCTTGCTTGCACCCAGGCGATGTTCGTGTCTTAATTGCTGTAAACGTATCATCCTTACACCATTTGGTGGATTGTGTTGTTTTTCCTCAAAAGGGACGCAGGCCTCATCCGAATGAATGTTCAGGAAGTGATTTGGATGGGGACATATACTTCGTTAGTTGGGATAAGGATTTGATCCCGCCTCAGCAAATCAAAGCAATGGATTATACTCCAGCGCCAAGTATTGAGCTAAATCGGGATGTTACAATGGAGGACGTTCATGAGTATTTTACCAACTATATAGTCAACGATAGCTTGGGAATCATTGCCAATGCACATACGGTGTTTGCTGATAGGGAGCCTTTCAAAGCAAGGAGCAGTCCTTGCACAGAGCTTGCACAGCTTTTTTCGATTGCAGTTGACTTTCCAAAAACTGGGGTGCCGGCTATCATACCCTCTCGCCTACACGTCAAAGAATATCCAGATTTTATGGAGAAAGGAAAACATATGTGGGGATATGTTTATGGAGCATTTGTTAAACATAGAGATGTTCAAGTTGAGAAATATGCAAAAACAATTATAAGCGTCCAACTTGCAGAATATGGGACTGCCAAGGAGGTTTGGGATCATCTAGAAAGATTGTATACCGTTTTTGCATTCCTTCCTAGGCCTCCTTCCAATAATCAAAACGGATTAATTGATGAAAGTGAGGTGGATTCATTCAACTTACCTCTCTATTCAACAACTCCAGAGCAAATGGAAGAGCTTGTTCAGAAAAATGGCAAGTTTAACATAGAAAGAATGGAGTTATCAGATCCAACATCGTGGATGAAAGGCAATGCGGATGTAAGCATTTGGGTAAGCAATGTAAGAGCTGCTATGGAGGCAACTTTCACTGAGAGTTTTGGATCTAAAACTGTTCAAGAGTTGTTTTCAAGACTTGCCATCAAACTAGAAGATTTTCGTGCCCAACTCAACGCAAAACTCCGTGAAAAGACTCAGCTCTTCCTCGTTTTGAAGCGTAAAAATAATTAA 3309 39.53 MGRTIWVHGFPSNSHTEEVKSFLEQYTGDGTVYAIKIRLPKGGGPRSYAIVQFTNVREAEIIIRLASRRLLYGTSYLKVKEVEHDIIPKPRAYLHSLPNVTLFFGCQISNEKFFVLWGETNVSVNMGFHMRKLDFLLSHKSKDYKFVLSYENIWQIKLRQPRGRAAKYLLFQLYGAPRLFRKDAPSNEDIFESPVFNYFRDGHDDQWVRTTDFTPFCSIGQSSALCLKLDRDVELPNLKENFAYYEQNNEPFILETGKSYSCDSNLVPIVGPHTSMDLPFELIFKINLLVQNGCLPGPALDQNFYRLVDPRRINFTFVEHALDNLYHLKECCYEPSSWLTKQYSKYRKHPPKSPSISLDSGLVYVRRVQITPCKVYFSGPEVNMSNRVLRKYPGDIDNFLRISFVDEEWDKLRSADLSPRTSLANEDRKTDVYKRILSILRNGLEVGGKQFEFLAFSSSQLRENSLWMFSSRTELTAEEIRNGMGDFSRIRNVAKYAARLGQSFSSSTESLTVERHEMELIPDIEVRHDEINYVFSDGIGKISIDFSKKVAAKCGIRGITPSAFQIRYGGYKGVVAVDPNLSLKLSLRKSMCKFESTSTKLDILAFTKYQPCVLNRQLITLLSTLGVKDCVFETKQREAVDQLNAILTDPLRAEEALESMSPGENTEILKKMLSCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIYVPNGRAMMGCLDETRTLEYGQVFVQFSDTRHMNSYNNDIGREVSKRFIVEGKVVVAKNPCLHPGDVRVLIAVNVSSLHHLVDCVVFPQKGRRPHPNECSGSDLDGDIYFVSWDKDLIPPQQIKAMDYTPAPSIELNRDVTMEDVHEYFTNYIVNDSLGIIANAHTVFADREPFKARSSPCTELAQLFSIAVDFPKTGVPAIIPSRLHVKEYPDFMEKGKHMWGYVYGAFVKHRDVQVEKYAKTIISVQLAEYGTAKEVWDHLERLYTVFAFLPRPPSNNQNGLIDESEVDSFNLPLYSTTPEQMEELVQKNGKFNIERMELSDPTSWMKGNADVSIWVSNVRAAMEATFTESFGSKTVQELFSRLAIKLEDFRAQLNAKLREKTQLFLVLKRKNN 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 40943164 40957374 + Bma012708.1 Bma14g01918 95899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01918 1102 Gene3D - 1 90 IPR012677 -
Bma14g01918 1102 CDD RRM_SF 5 80 - -
Bma14g01918 1102 Gene3D - 987 1077 IPR042086 -
Bma14g01918 1102 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 926 - -
Bma14g01918 1102 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 926 IPR007855 GO:0003968
Bma14g01918 1102 Gene3D Vaccinia Virus protein VP39 1002 1032 IPR029063 -
Bma14g01918 1102 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 987 1100 IPR029063 -
Bma14g01918 1102 SUPERFAMILY RNA-binding domain, RBD 2 86 IPR035979 GO:0003676
Bma14g01918 1102 Pfam RNA dependent RNA polymerase 370 926 IPR007855 GO:0003968
Bma14g01918 1102 Pfam SAM dependent carboxyl methyltransferase 987 1099 IPR005299 GO:0008168
Bma14g01918 1102 SMART rrm1_1 4 80 IPR000504 GO:0003723
Bma14g01918 1102 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 3 84 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01918 K11699 RDR, RDRP; RNA-dependent RNA polymerase [EC:2.7.7.48] - qsu:112038837 1307.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01277 Bma-Chr1:17300207 Bma14g01918 Bma-Chr14:40943164 2.11E-170 dispersed
Bma07g00515 Bma-Chr7:6401081 Bma14g01918 Bma-Chr14:40943164 9.28E-24 dispersed
Bma14g01918 Bma-Chr14:40943164 Bma08g00047 Bma-Chr8:668568 1.35E-09 dispersed
Bma14g01918 Bma-Chr14:40943164 Bma14g01919 Bma-Chr14:40970258 7.79E-35 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g508 . . . . . . Bma14g01918 . . . . Cma04g00090 . . . . Cpe01g01851 . . . . . . . . . . . . . . . . Cone6ag0354 . . Csa05g01978 . . . . . . . . . . . Cmo04g02226 . Cma04g02132 Cma15g00901 Car04g02070 . . . . . . . . . . . . . . . . . . . Chy09g00813 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002346 1 2 2 1 1 2 0 2 2 2 2 2 2 1 2 2 4 3 2 2 2 3 2 2 2 2 2 5 3 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01918 Bma_Chr14 FPKM 29.449278 33.397495 19.454496 22.093771 15.16253 15.726721 13.788712 220.187195 206.452698 216.639099