Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01920 ATGGCTTCTTCCGGTGGAAATTCCTCAGGTTCTCTGCAGCCTCTGAATTCTGGGTCTGATGAAGATATGCAACGATTGATGGATCAGAGGAAAAGGAAGCGAATGCAATCGAACAGGGAATCTGCGAGGGGAGGCGAAGTTTCTGGAGTTTCCAGCAAAGTTTCTGGTGGATTGGCGTCCAAGGTGAATACGAATTTGAGGAAGAGGAAGTTTGGAGGAGGCGAAGTTTCCAAAAACGTAGTTCCAGTGGATAATAAGGTTTTTAATGCTCCTTTTCGTAGAATTACAAGATCTTATTATAAGAAGAGCGAATGTCAAGGAAATGAAGATTGGAAAGAGGCTGTAGGTAGTGAAGCTGAACCAGAACCATCCGAAATGTCATGCGTGGAGTCCAATTCTGGTGGCTCTGACGCCGTTCCTGGTTCGGAGATTTCCAGTGTCGAACAACTTCCAAAAGAAACATCCGACCAAATTTTGAAAATCAGTGCTGGAGATGTGAAATTCTCATCAAATAATTGTGAAGATGATATCGTTTCGCTCATTTCTGGTTTAGAATCGTGCTCTGAAACAAACTTTGCTTGCTCCGATGATTATGCAAAGCTTGAACTACCTAACGTTCATAGAAATTACAACAACGCAAATTGCGATGTCTTGACGTCAGTTTCGGCTATCGGTGAACCCAATCTTGCATGCCAGGAACAATTCTCTTATGAAGAACTCTCTGAGAATTCATCTAGTCAGGTACTTTCCGAGCTTCAATCAGAAAGTTTCCTCGACAATTCAGACCTAGAATTCTTAGACTACACTCCGTCAATTTTCTTTGATTCTGGAAGCGAATTCTCGGAAAGATCCATTGGAGATTTAACCCCTTCACCTACTTTCTCCCTGTTGCTCCGATTCAGAGAGGAGTTTCAAAGATCAACTAATTCTCAGGATAATAACAATGTCTCGCGCATGGAAGAAGAGTACAAAGATAAATCCGCATTTTTGCGGTTCGAAAATGAGGAAGACGAGGAGAGCTATCAAATGTTGAGAGACAGAGAAAGACGGCAAGTCCTTTTGCGCGACCTGTTCACTGATTCGAAGCTTCATCATGAGACCGTATTCCTGGGAGTAAGCCTCTTTGACCGGTTCCTCAGCAAAGGATTCTTCAATAACAAAAGGCATCTTCAGATTCTTGGCATAGCGAGTCTAACATTGGCAACTAGGATTGAGGAAAATCAGCCTTATAACAACGTGAGGAGAAAGAATTTGAACGTGGGAGGGAATGTGTACAATAGATGTGAAGTTGTTGCCATGGAATGGATGGTTGAAGAAGTCCTCGACTTCAATTGTTTCCTGCCCACTGTTTACAACTTTTTATGGTTCTATTTGAAAGCTGCTGAAGGTGATGCACATTTAGAGAAGAGGACTCGGTCTCTAGCTGTTTTAGTACTATCAGACGATGTGCATATCCGCCATAGGCCCTCAACAATTGCTGCCGCGCTTGTCATCCTGGCATCTCTGGAGAGCAACCAGGATTCCACCCGTCAACGAGTCATAGAGACACACGTTAGAACAAAAAGTGACGATCTACACCAATGCATTGAGGTACAAACCTAG 1602 43.2 MASSGGNSSGSLQPLNSGSDEDMQRLMDQRKRKRMQSNRESARGGEVSGVSSKVSGGLASKVNTNLRKRKFGGGEVSKNVVPVDNKVFNAPFRRITRSYYKKSECQGNEDWKEAVGSEAEPEPSEMSCVESNSGGSDAVPGSEISSVEQLPKETSDQILKISAGDVKFSSNNCEDDIVSLISGLESCSETNFACSDDYAKLELPNVHRNYNNANCDVLTSVSAIGEPNLACQEQFSYEELSENSSSQVLSELQSESFLDNSDLEFLDYTPSIFFDSGSEFSERSIGDLTPSPTFSLLLRFREEFQRSTNSQDNNNVSRMEEEYKDKSAFLRFENEEDEESYQMLRDRERRQVLLRDLFTDSKLHHETVFLGVSLFDRFLSKGFFNNKRHLQILGIASLTLATRIEENQPYNNVRRKNLNVGGNVYNRCEVVAMEWMVEEVLDFNCFLPTVYNFLWFYLKAAEGDAHLEKRTRSLAVLVLSDDVHIRHRPSTIAAALVILASLESNQDSTRQRVIETHVRTKSDDLHQCIEVQT 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 40983192 40991032 + Bma012710.1 Bma14g01920 95901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01920 533 SUPERFAMILY Cyclin-like 448 530 IPR036915 -
Bma14g01920 533 MobiDBLite consensus disorder prediction 111 151 - -
Bma14g01920 533 MobiDBLite consensus disorder prediction 1 75 - -
Bma14g01920 533 MobiDBLite consensus disorder prediction 126 151 - -
Bma14g01920 533 SUPERFAMILY Cyclin-like 334 444 IPR036915 -
Bma14g01920 533 SMART cyclin_7 352 439 IPR013763 -
Bma14g01920 533 Pfam Cyclin, N-terminal domain 315 444 IPR006671 -
Bma14g01920 533 PANTHER CYCLINS 31 530 IPR039361 -
Bma14g01920 533 PANTHER CYCLIN-SDS 31 530 - -
Bma14g01920 533 CDD CYCLIN 354 409 IPR013763 -
Bma14g01920 533 Gene3D - 340 441 - -
Bma14g01920 533 MobiDBLite consensus disorder prediction 1 22 - -
Bma14g01920 533 CDD CYCLIN 447 528 IPR013763 -
Bma14g01920 533 PIRSF Cyclin_A_B_D_E 301 531 IPR039361 -
Bma14g01920 533 PIRSF Cyclin_A_B_D_E 8 200 IPR039361 -
Bma14g01920 533 Pfam Cyclin, C-terminal domain 448 531 IPR004367 -
Bma14g01920 533 Gene3D - 442 532 - -
Bma14g01920 533 MobiDBLite consensus disorder prediction 23 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01920 K21777 CCNB; G2/mitotic-specific cyclin-B, other - qsu:112029982 414.075
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01920 Bma-Chr14:40983192 Bma05g00138 Bma-Chr5:4196727 4.24E-14 dispersed
Bma14g01920 Bma-Chr14:40983192 Bma06g00078 Bma-Chr6:1217076 1.48E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g524 . . . . . . Bma14g01920 . . . . Cma04g00085 . Car04g00086 . . . . . . . . . . . . . . . . . . . Cone6ag0348 Cone9ag0381 . . Chy10g00215 . . Blo11g00966 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01127 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008679 0 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01920 Bma_Chr14 FPKM 4.394065 4.036326 5.807609 6.677721 9.291458 9.008281 10.571391 10.786833 10.992373 11.455513