Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01921 ATGCAGGTAGCGACGGTCAAAGTGAGTAACATCTCTTTATCTGTTTCGGAGAAGGATATTCAAGAATTCTTTTCATTCTCCGGAGATATTCAGTATGTCGAAATGCAGAGGGAAACCGGAAGGACTCAGCTGGCTTTTGTTACGTTCAAGGACTCTCAAGGAGCTGAGACGGCAATGCTTTTGACGGGAGCAACTATAGGCGAACTATCTGTAAACATTTCGCTAGTAGAGGATTATCGATTGCCGCCTGAAGCTTTTCCCCAACCCTTGGAGAACAAGTTGGCCATTACTAGTTCGGCCTTTAAGAAGACAGAAGAAGTAGTAAGCACCATGCTCGCCAACGGTATCATCTTGGGAAAGGACGCCATTAACAAAGCAAAAGCTTTGGACGAGCAGCATCACTTGACGTCAAATGCCACTGCGACCGTGGCCTCGTTCGACCAAAAAATAGGCCTGAGTGAGAAGATTAGCGTCGGAACCTCTCTGGTGGGTGCAAAGATGAGAGAGATGGACGGAAAGTTTCAAGTCTCAGAAATCACAAGATCGGCCCTGGCAGTCGCCGAGCAGAAGGCGAGCAGTGCAGGGACGGCTATAATGAGCAACAATCTTGTCTCGGCCGGAGCTTCATGGTTTTCATCCGCCATCAGTGTGGTGGCGAAAGCGGCGGAGGATGTGAGCCTCAGGACCAAGGAGAAGGTTGAAAAGGCGGAGGAGGAAAAGAAGGAGAGTATTTACAGGGAGATTAACGACTTTGCTGAGCTTCATCTTGATGAGTCTTCAAGTGAGCCCGCAATTGTTCCAGTCAGTTCAGTTGATCGTTGA 822 48.54 MQVATVKVSNISLSVSEKDIQEFFSFSGDIQYVEMQRETGRTQLAFVTFKDSQGAETAMLLTGATIGELSVNISLVEDYRLPPEAFPQPLENKLAITSSAFKKTEEVVSTMLANGIILGKDAINKAKALDEQHHLTSNATATVASFDQKIGLSEKISVGTSLVGAKMREMDGKFQVSEITRSALAVAEQKASSAGTAIMSNNLVSAGASWFSSAISVVAKAAEDVSLRTKEKVEKAEEEKKESIYREINDFAELHLDESSSEPAIVPVSSVDR 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 40991707 40993055 - Bma012711.1 Bma14g01921 95902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01921 273 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 2 272 - -
Bma14g01921 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 67 IPR000504 GO:0003723
Bma14g01921 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Bma14g01921 273 SUPERFAMILY RNA-binding domain, RBD 3 78 IPR035979 GO:0003676
Bma14g01921 273 SMART rrm1_1 5 74 IPR000504 GO:0003723
Bma14g01921 273 Coils Coil 219 239 - -
Bma14g01921 273 Gene3D - 2 74 IPR012677 -
Bma14g01921 273 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 2 272 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01921 - - - tcc:18610028 357.836
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01340 Bma-Chr5:52925786 Bma14g01921 Bma-Chr14:40991707 1.24E-54 dispersed
Bma14g00075 Bma-Chr14:1005102 Bma14g01921 Bma-Chr14:40991707 1.92E-96 dispersed
Bma14g01921 Bma-Chr14:40991707 Bma01g02688 Bma-Chr1:84345299 3.34E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g525 . . . . . . Bma14g01921 . . . . Cma04g00084 . Car04g00085 . . . . . . . . . . . . . . . . . . . Cone6ag0347 . . . Chy10g00214 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01126 . .
Vvi16g115 . . . . . . . Bma14g01921 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g02453 . Blo09g00192 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g00538
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010782 0 1 0 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01921 Bma_Chr06 FPKM 140.56955 156.538376 138.193726 131.149384 170.382385 186.834793 169.196899 188.998093 201.836258 199.021423
Bma14g01921 Bma_Chr08 FPKM 52.377178 51.258106 41.113194 41.199829 46.19891 55.259453 45.602818 103.877777 111.498108 93.284828
Bma14g01921 Bma_Chr14 FPKM 202.32193 203.434082 173.064835 157.933212 261.916229 314.806702 240.307999 224.34494 248.752213 218.952576