Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01925 ATGTTTGGGGAGAAGGGTCTTTCTAATGCCCTTTCATCTGAGGCTGCTGAGCAGTCTCAGAGCAAGCTCTCTCGCCATATTACCCAACGTAATAGGGATCTACATGCTGAAAAAATGGGGGTTTCTGAGAAAAACGGGAGTCACTTGAGAGAATCTGATATGGGTGCTCATGGGTTTCCATTAAAACCCTTGAAAATCGCTCATTCAGGCTCCCAGGAGCTTACTTTCAGCTACCTGTGTGATAATTCCAAATCGGGTTTTCTGGAGAGAGATCTTCCCGGCAGAAATTCTTCGGAGAAAGTTAGCTACAAAGGCAAAGAAGTTGTCACTGCTGATAGTTTTAACGGCGATAACAAATGGGTAGAGAGGGATTTCCTGAATTTAAACGAGAAGAGAGAGAATTCGTCGAAACGTGAAGTTGCAGAAGATGTTGATAGAGGAAACAGAGAAAAGAGGCCAAAGCTCGAGACTCTTAATCTGTCACTCGCTTTGCCTGATCCTTCTCTTTCTCTCACTGCTTCGAACGCCCTGCAAAACGAAGATCTGGCAGCTCGATCCAAACCTACCATGAGCTTGCAGTCTTTAGCCCCATCAAACAACAACACTAAAACCACATGTTCTAATGATTTTACTGCTGCTTCACTTTCTTACTCGTATTCCCATCCATTTTCCCACAATCCTAGTTGTTCTTTGACGCATAATTCAACTGAGCATTATGAGTGTTCGGCTGGTAGAGATGAGCAGATATGGAATTGCGGAGAGGGGACAAATGGTTCCGTTCATAGTCGGTTTAAACCATTGGGAGATGGAGTCACTTTATCCAATCATGGCAGTAGTCTTTTCTCGATGATGCAGGGTTATCGTATGATGAACAAGGATTCCCAAAATAATCATAATTTACTGACAAGTTCGGAGAACCATTCGTTCCTTCCTTCTGAACTGCCTGCTAGACTAAGGTTATCATCTGGGATGATTGAAAAAATCATCCATGGCTGGACTCTCTCAGATGCAGATGTCCTATCAGATTTTCCAACTTCAGATGCTTCCCCAAAAGAGTTGCCGACGCCAAAAATTAGCCTCGGGAAAAAAGAGACCGCCCCATTCCTTCAGTCGGCATCGAAATCGTCGCCATATACTTTTGAAAATATGAGATCTTGTAGCGGACAAAGCGATTTACTTTCGAATGATCATCACCATGCTGATCTCAAGGCCGAGAAGTTTTCATTCAACACTTCATCGAAAAATGAAGGGCTCGATAGCCTTGAAAGTATAGTGCGGATCAAGGAAGCCGAGGCGAGAATGTTCCAAAACAAGGCAGATGATGCGAGGAGAGAGGCGGAAGGACTGCAACGAATAATCATTGCAAAAACTCGAAAATTGGAGGAAGATTATGGCGAAAAGCTTGCTAAATTGAGTGTGGAAACGACGGAGAAGAAGCGGAGGAAGAAAGTCGAGGAGCTGAAAGTGATAGAGAATTCTCATTTTGATTACTGCAATATGAAAAAGAGAATGCAAACTGAGATTACTGGTTTGCTGCAAAGAATGGAGGCAACCAAGAAGCAATTGATCTAA 1572 43.32 MFGEKGLSNALSSEAAEQSQSKLSRHITQRNRDLHAEKMGVSEKNGSHLRESDMGAHGFPLKPLKIAHSGSQELTFSYLCDNSKSGFLERDLPGRNSSEKVSYKGKEVVTADSFNGDNKWVERDFLNLNEKRENSSKREVAEDVDRGNREKRPKLETLNLSLALPDPSLSLTASNALQNEDLAARSKPTMSLQSLAPSNNNTKTTCSNDFTAASLSYSYSHPFSHNPSCSLTHNSTEHYECSAGRDEQIWNCGEGTNGSVHSRFKPLGDGVTLSNHGSSLFSMMQGYRMMNKDSQNNHNLLTSSENHSFLPSELPARLRLSSGMIEKIIHGWTLSDADVLSDFPTSDASPKELPTPKISLGKKETAPFLQSASKSSPYTFENMRSCSGQSDLLSNDHHHADLKAEKFSFNTSSKNEGLDSLESIVRIKEAEARMFQNKADDARREAEGLQRIIIAKTRKLEEDYGEKLAKLSVETTEKKRRKKVEELKVIENSHFDYCNMKKRMQTEITGLLQRMEATKKQLI 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 41062146 41064968 + Bma012715.2 Bma14g01925 95906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01925 523 Pfam Coiled-coil region of Oberon 394 512 IPR032535 -
Bma14g01925 523 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 419 439 IPR004082 -
Bma14g01925 523 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 458 480 IPR004082 -
Bma14g01925 523 MobiDBLite consensus disorder prediction 26 48 - -
Bma14g01925 523 Coils Coil 501 523 - -
Bma14g01925 523 MobiDBLite consensus disorder prediction 11 25 - -
Bma14g01925 523 MobiDBLite consensus disorder prediction 1 48 - -
Bma14g01925 523 MobiDBLite consensus disorder prediction 132 152 - -
Bma14g01925 523 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 338 522 IPR004082 -
Bma14g01925 523 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 321 IPR004082 -
Bma14g01925 523 Coils Coil 425 452 - -
Bma14g01925 523 PANTHER PROTEIN OBERON 3 1 321 - -
Bma14g01925 523 PANTHER PROTEIN OBERON 3 338 522 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01925 - - - vvi:100245684 394.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma14g01925 Bma15g00021 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00839 Bma-Chr9:47404380 Bma14g01925 Bma-Chr14:41062146 1.19E-11 dispersed
Bma14g01925 Bma-Chr14:41062146 Bma15g00021 Bma-Chr15:259799 1.51E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g536 . . . . . Bpe10g01008 Bma14g01925 Bma15g00021 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0340 Cone9ag0374 . Csa05g01962 . . Blo06g01035 . Bda07g01736 . . . . . . . . Cma04g01801 . . . . . . . . . . . . . . . . . . . . . . Cme09g01299
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005873 3 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01925 Bma_Chr14 FPKM 3.71013 3.462842 0.930605 1.606738 3.078995 2.555007 3.330607 2.082722 1.57405 1.474689