Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01927 ATGGCGGACATTTCCGGCGACGGAGGAGAACTGACCTACGGTAGGACGGAGATGCTTGCGGCCTCTACTCCCAATCCGCCGCCGTTGACCGTGTCGGGATCATTCAAGGACGGTAAGAGCTCCTCTAGGAGGAGAGCTTCAGTGAGGCCGAGTTTGGACGCCGACGAGTTCTTGAACTTGTTGCACGGCTCGGATCCGGTCAAGGTCGAGCTCAATAGGCTCGAGAATGAGGTTCGAGACAAGGACCGAGAGTTGGGAGAAGTGCAGGCGGAGATCAAAGCCTTGAAATTTTCCGAGCGACTTAGAGAAAAGGCAGTCGAAGAGATAAATTTTTATCTGAGGAAAAACTGGCTATGA 357 53.22 MADISGDGGELTYGRTEMLAASTPNPPPLTVSGSFKDGKSSSRRRASVRPSLDADEFLNLLHGSDPVKVELNRLENEVRDKDRELGEVQAEIKALKFSERLREKAVEEINFYLRKNWL 118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 41119125 41121735 - Bma012719.1 Bma14g01927 95908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01927 118 Coils Coil 71 91 - -
Bma14g01927 118 MobiDBLite consensus disorder prediction 1 48 - -
Bma14g01927 118 MobiDBLite consensus disorder prediction 23 37 - -
Bma14g01927 118 Pfam Microtubule-associated protein 70 55 114 IPR009768 GO:0007010|GO:0008017
Bma14g01927 118 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-2 1 111 IPR009768 GO:0007010|GO:0008017
Bma14g01927 118 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-1 1 111 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01927 - - - csv:101212718 159.844
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma14g01927 Bma15g00026 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01927 Bma-Chr14:41119125 Bma14g01937 Bma-Chr14:41317956 3.09E-61 dispersed
Bma14g01927 Bma-Chr14:41119125 Bma15g00026 Bma-Chr15:279938 1.45E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g500 . . . . . Bpe10g01001 Bma14g01927 Bma15g00026 Cmo04g01102 . Cma04g01029 Cma04g00077 Car04g00961 Car04g00073 Sed04g3001 . . Bhi07g00400 Tan04g1510 Cmetu10g0919 Lac13g1329 Hepe01g0590 . . Cla07g00538 Cam07g0579 Cec07g0638 Cco07g0604 Clacu07g0582 Cmu07g0618 Cre07g0954 . Cone19ag0733 Cone6ag0360 Cone9ag0390 Lsi04g01101 . . . Blo06g01031 . Bda07g01745 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01255 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000868 2 2 0 4 3 3 5 3 3 2 2 2 5 1 2 6 3 6 5 3 2 1 2 3 3 2 2 6 2 2 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01927 Bma_Chr14 FPKM 29.089205 33.012569 23.936808 24.629976 20.329403 21.252392 17.468279 23.261454 24.161209 21.227369