Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01935 ATGGAGGTCGAATACAACAGAGCGAGCGAAATTAAGAAGTTCGACGATTCGAAGGCCGGAGTTAAAGGCCTGCTCGACGCCGGAATAACCTCCATCCCCCCCTTCTTCATTCATCCCCCCGAAACTCTGGCCGATCTGAAGTCGAACCGGAAATACGATTCCAGATATGAAAACGACGTCCCTGTAATTCCGACCATCGATTTATCCGGGGTTGATGACCCAGATCGCCGGCCGGAAATCATCGATCAAATAAAACTGGCCTCCTCCACCTTTGGATTCTTCCAGGTGACGAATCACGGAGTCCCACTTAAAATTATTGACCGGATGAAGGATTTTCACGAGCAGCCGGCGGAGATGAAAGCGCGGGTGTATCGTAGGGAGGTGGCGACTGGTGTATCGTACATTTCCAATATTGACTTGTTCCACTCAAAAGCTGCCAGCTGGAGGGATACGCTCCAAATCCGATTGGGCCCTACACCCGCAGTGTATGACGAGATCCCGGATATTTGTAGAGATGAAGTCTTCGAATGGGACCGAGAGATCGTACGGTTGGGAGAGGTTCTGATGGGAGTGCTTTGCGAGGGGCTCGGATTGGATGCGGGAAGGTTGAAAGAGTTAACGTGTGGAGAAGGGAGGGTGATGGTGGGACACTACTATCCGTACTGCCCCCAGCCTGATCTGACGGTGGGGATCAATTCTCACACTGATCCTGGGATTCTGACGCTGTTGTTGCAGGATGATAGAGGTGGTTTGCAGGTTAAGCACGGTGGGGGTTGGGTGGACGTGAATCCTGTCCCTAACGCCATTGTTATCAACATCGGAGACTTACTGCAGATCATGTCGAACGAAGAATACAAGAGCGTCGAACATAGAGTATTGGCGAACAGTCAGAAAGAACCACGAGTGTCGGTGGCGGTTTTCCTGAACCCAAGAATTAGAGAAAACTTTTACGGGCCGTTACCGGAGATTATATCGCCGGAGAAGCCAGTCGTTTATCGTGAATTCACGTACGAAGATTACATAAGACGCTTCTTCACCAAAGAGTTGGACGGAAAATCTCTCCCGAATTTCTACCGAGTTTGA 1083 50.32 MEVEYNRASEIKKFDDSKAGVKGLLDAGITSIPPFFIHPPETLADLKSNRKYDSRYENDVPVIPTIDLSGVDDPDRRPEIIDQIKLASSTFGFFQVTNHGVPLKIIDRMKDFHEQPAEMKARVYRREVATGVSYISNIDLFHSKAASWRDTLQIRLGPTPAVYDEIPDICRDEVFEWDREIVRLGEVLMGVLCEGLGLDAGRLKELTCGEGRVMVGHYYPYCPQPDLTVGINSHTDPGILTLLLQDDRGGLQVKHGGGWVDVNPVPNAIVINIGDLLQIMSNEEYKSVEHRVLANSQKEPRVSVAVFLNPRIRENFYGPLPEIISPEKPVVYREFTYEDYIRRFFTKELDGKSLPNFYRV 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 41293006 41294319 - Bma012728.1 Bma14g01935 95916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01935 360 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 204 310 IPR005123 -
Bma14g01935 360 Pfam non-haem dioxygenase in morphine synthesis N-terminal 63 155 IPR026992 -
Bma14g01935 360 Gene3D - 11 342 IPR027443 -
Bma14g01935 360 SUPERFAMILY Clavaminate synthase-like 18 352 - -
Bma14g01935 360 Pfam 2OG-Fe(II) oxygenase superfamily 213 310 IPR044861 -
Bma14g01935 360 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE HOMOLOG 4-LIKE 3 346 - -
Bma14g01935 360 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 3 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01935 - - - jre:109003981 517.694
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma14g01935 Bma15g00029 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01073 Bma-Chr5:49470710 Bma14g01935 Bma-Chr14:41293006 4.26E-102 dispersed
Bma14g01935 Bma-Chr14:41293006 Bma04g00717 Bma-Chr4:7323605 3.79E-63 dispersed
Bma03g00508 Bma-Chr3:3951258 Bma14g01935 Bma-Chr14:41293006 8.08E-64 transposed
Bma07g00224 Bma-Chr7:2652816 Bma14g01935 Bma-Chr14:41293006 8.67E-69 transposed
Bma14g01935 Bma-Chr14:41293006 Bma15g00029 Bma-Chr15:317012 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g488 . . . . . Bpe10g00997 Bma14g01935 Bma15g00029 . . . Cma04g00074 . Car04g00070 . . . Bhi07g00382 . . Lac13g1352 . . . Cla07g00549 Cam07g0585 Cec07g0648 Cco07g0615 Clacu07g0588 Cmu07g0623 Cre07g0959 . . . . Lsi04g01107 . . Cme10g01612 . Blo11g00968 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009009 2 1 1 2 1 1 1 1 1 0 1 1 1 1 0 1 1 3 1 1 1 1 1 1 1 1 1 1 1 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01935 Bma_Chr14 FPKM 55.691113 56.205097 41.2267 43.340591 49.751827 51.836674 45.011047 50.430439 53.712666 52.061581