Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01938 ATGACCAGAAAGAAGGTGAAGCTTTCGTACATATCAAATGATTCAGCAAGAAAAGCAACGTTTAAGAAAAGGAAGAAGGGACTGATGAAGAAGGTGAGCGAACTCACGACCCTTTGCGGGATCGATGCTTGCGCGATCATTTACAGCCCCTACGACTCTCAGCCTGAGGTTTGGCCTTCTGCCGGGGGAGTCCAGCGCGTGGTGGCTCAGTTCAAGAAAATGCCAGAGATGGAGCAGAGCAAGAAGATGGTGAACCAGGAGAGCTTTCTTCGCCAACGGATCGCCAAAGCACAAGAGATGTCGAAGAAGCAAAGGAAGGAGAACCGAGAGAAGGAGATTCGCCAATTGATGTTCGACTGCCTAACCGGGACAAAGGACCTGAACAGCATGGGCATGGTGAAGCTGAACGAGACGGGATGGTTGGTTGATAGCACACTCAAGGATGTAAACAAGAGGATCGAGTCACTCCAGAAAGAGGCCGCCAGTCGTACGAACGTCGCCCACCCTGTCAATCCAGCTGTGGGCGGAGGTGGCGGAGCGGTAGCAGAAGATGGTTTCGGGGGGAGCGGATGGGAGAAGGAGGAGCCATGGTTCATGGATATTGGCTTTGGTGGGGACGACATGATTCTGCCTCTTGCAGATCCTAGTCTTAACTCTCTCTATCTTTGGTCCAACGCGTTCTTTCCCTGA 690 52.17 MTRKKVKLSYISNDSARKATFKKRKKGLMKKVSELTTLCGIDACAIIYSPYDSQPEVWPSAGGVQRVVAQFKKMPEMEQSKKMVNQESFLRQRIAKAQEMSKKQRKENREKEIRQLMFDCLTGTKDLNSMGMVKLNETGWLVDSTLKDVNKRIESLQKEAASRTNVAHPVNPAVGGGGGAVAEDGFGGSGWEKEEPWFMDIGFGGDDMILPLADPSLNSLYLWSNAFFP 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 41326510 41327199 - Bma012731.1 Bma14g01938 95919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01938 229 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bma14g01938 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 165 - -
Bma14g01938 229 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bma14g01938 229 Coils Coil 146 166 - -
Bma14g01938 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Bma14g01938 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma14g01938 229 Coils Coil 94 114 - -
Bma14g01938 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma14g01938 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma14g01938 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma14g01938 229 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bma14g01938 229 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 165 - -
Bma14g01938 229 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01938 - - - vvi:100254549 280.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01938 Bma-Chr14:41326510 Bma15g00363 Bma-Chr15:3835191 3.04E-159 dispersed
Bma14g01938 Bma-Chr14:41326510 Bma02g00290 Bma-Chr2:3336861 4.50E-74 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00020 . 1 220 Type I MADS-box Gene Family AT5G60440 50.9 7.5e-47 184.5
Bma03g01004 . 1 218 Type I MADS-box Gene Family AT1G77980 56.7 2.0e-61 233.0
Bma03g01004 . 1 222 Type I MADS-box Gene Family AT1G77950 51.1 1.7e-52 203.0
Bma14g01938 . 1 181 Type I MADS-box Gene Family AT5G48670 59.7 8.0e-55 211.1
Bma15g00363 . 1 157 Type I MADS-box Gene Family AT5G48670 64.3 1.5e-53 206.8
Bma01g00881 . 1 155 Type I MADS-box Gene Family AT5G48670 63.5 3.5e-50 195.7
Bma02g00290 . 1 160 Type I MADS-box Gene Family AT5G48670 62.1 3.5e-50 195.7
Bma08g00020 . 1 220 Type I MADS-box Gene Family AT5G60440 50.9 7.5e-47 184.5
Bma03g01004 . 1 218 Type I MADS-box Gene Family AT1G77980 56.7 2.0e-61 233.0
Bma03g01004 . 1 222 Type I MADS-box Gene Family AT1G77950 51.1 1.7e-52 203.0
Bma14g01938 . 1 181 Type I MADS-box Gene Family AT5G48670 59.7 8.0e-55 211.1
Bma15g00363 . 1 157 Type I MADS-box Gene Family AT5G48670 64.3 1.5e-53 206.8
Bma01g00881 . 1 155 Type I MADS-box Gene Family AT5G48670 63.5 3.5e-50 195.7
Bma02g00290 . 1 160 Type I MADS-box Gene Family AT5G48670 62.1 3.5e-50 195.7
Bma08g00020 . 1 220 Type I MADS-box Gene Family AT5G60440 50.9 7.5e-47 184.5
Bma14g01938 . 1 181 Type I MADS-box Gene Family AT5G48670 59.7 8.0e-55 211.1
Bma15g00363 . 1 157 Type I MADS-box Gene Family AT5G48670 64.3 1.5e-53 206.8
Bma01g00881 . 1 155 Type I MADS-box Gene Family AT5G48670 63.5 3.5e-50 195.7
Bma02g00290 . 1 160 Type I MADS-box Gene Family AT5G48670 62.1 3.5e-50 195.7
Bma03g01004 . 1 222 Type I MADS-box Gene Family AT1G77950 51.1 1.7e-52 203.0
Bma03g01004 . 1 218 Type I MADS-box Gene Family AT1G77980 56.7 2.0e-61 233.0
Bma08g00020 . 1 220 Type I MADS-box Gene Family AT5G60440 50.9 7.5e-47 184.5
Bma14g01938 . 1 181 Type I MADS-box Gene Family AT5G48670 59.7 8.0e-55 211.1
Bma15g00363 . 1 157 Type I MADS-box Gene Family AT5G48670 64.3 1.5e-53 206.8
Bma01g00881 . 1 155 Type I MADS-box Gene Family AT5G48670 63.5 3.5e-50 195.7
Bma02g00290 . 1 160 Type I MADS-box Gene Family AT5G48670 62.1 3.5e-50 195.7
Bma03g01004 . 1 222 Type I MADS-box Gene Family AT1G77950 51.1 1.7e-52 203.0
Bma03g01004 . 1 218 Type I MADS-box Gene Family AT1G77980 56.7 2.0e-61 233.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58429 PF00319 SRF-TF 1.50E-18 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01938 Bma_Chr14 FPKM 4.436297 4.306223 15.246517 12.839093 24.588305 25.799084 27.295212 19.13422 20.357111 17.093584