Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01952 ATGAGTCTGTTAGGAAAACTAGAGACTGATGTAGAAATAAAGGCTTCCGCAGAGAAGTTTCATGAGATGTTCAGGAGCAAACCACACCATATCACACATGCAACCTCTCATAATATTCAAGGATGTGAGTTGCATGAAGGTGATTGGGGCACCGTCGGATCGATCATCTACTGGAATTATGTTCATGATGGAAAGCCTTCTGTGGCCAAGGAAGTAATAGAAGCAATAGATGAGGAAAACAAATCTGTGACATTCAGAGTGATAGAAGGACATCTTCTGGATGAGTACAAGTTCTTCAAACTCACAGTTCAAGTCGCTCCAAAAGGAGAAGGAAGCGTTGTGCATTGGACTTTAGAATACGAAAAACTACATGACCAGATCCCAGATTCTCATAGTCTGCTTCAATTTTGTGTCGATGTGTCAAAGGATCTGGACGAGCACCTGATCGCTCAGCCTTGA 459 42.48 MSLLGKLETDVEIKASAEKFHEMFRSKPHHITHATSHNIQGCELHEGDWGTVGSIIYWNYVHDGKPSVAKEVIEAIDEENKSVTFRVIEGHLLDEYKFFKLTVQVAPKGEGSVVHWTLEYEKLHDQIPDSHSLLQFCVDVSKDLDEHLIAQP 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 42067054 42067734 - Bma012754.1 Bma14g01952 95933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01952 152 SUPERFAMILY Bet v1-like 1 149 - -
Bma14g01952 152 CDD Bet_v1-like 5 148 - -
Bma14g01952 152 Gene3D - 1 151 IPR023393 -
Bma14g01952 152 Pfam Pathogenesis-related protein Bet v 1 family 3 150 IPR000916 GO:0006952
Bma14g01952 152 PANTHER MLP-LIKE PROTEIN 423 1 148 - -
Bma14g01952 152 SMART Bet_v_1_2 2 151 IPR000916 GO:0006952
Bma14g01952 152 PANTHER MLP-LIKE PROTEIN 34-RELATED 1 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01952 - - - cmos:111448885 244.202
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01943 Bma-Chr14:41479008 Bma14g01952 Bma-Chr14:42067054 2.59E-108 dispersed
Bma14g01944 Bma-Chr14:41496041 Bma14g01952 Bma-Chr14:42067054 7.06E-112 dispersed
Bma14g01952 Bma-Chr14:42067054 Bma15g00039 Bma-Chr15:491270 2.24E-34 dispersed
Bma14g01951 Bma-Chr14:42058851 Bma14g01952 Bma-Chr14:42067054 4.35E-92 tandem
Bma14g01952 Bma-Chr14:42067054 Bma14g01953 Bma-Chr14:42105587 6.62E-111 tandem
Bma14g01776 Bma-Chr14:38163474 Bma14g01952 Bma-Chr14:42067054 4.01E-27 transposed
Bma14g01952 Bma-Chr14:42067054 Bma15g00001 Bma-Chr15:57314 4.50E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g441 . . . . . . Bma14g01952 . . . . . . . . . . Bhi07g00313 . . . . . . . . . . . . . Cone13ag0755 Cone19ag0759 . . . . . . Blo06g01018 . Bda07g01759 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000126 7 11 4 7 2 7 0 7 4 5 8 6 16 3 3 16 6 2 0 15 6 6 11 14 6 8 10 7 13 6 216
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01952 Bma_Chr14 FPKM 7.705525 9.146222 25.013706 28.511995 9.873107 10.862119 10.532523 21.738653 22.032375 21.248877